Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 3.0e-195 684.9 321 100.0
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 6.4e-153 544.3 321 77.3
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 6.6e-150 534.3 321 78.2
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.5e-149 533.1 318 75.8
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 1.9e-149 532.7 319 76.2
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 2.5e-149 532.3 321 76.6
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 7.3e-149 530.8 320 74.7
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.2e-148 530.0 319 74.3
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 3.6e-148 528.5 320 74.1
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 6.2e-148 527.7 320 74.4
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 1.1e-147 526.9 318 74.8
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 1.8e-147 526.2 321 75.1
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 4.0e-147 525.0 320 74.1
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 6.8e-147 524.2 320 74.1
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 8.9e-147 523.9 318 74.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.5e-146 523.1 320 73.8
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 2.6e-146 522.3 320 72.8
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 7.6e-146 520.8 318 74.2
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 6.4e-145 517.7 322 73.3
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 8.4e-145 517.3 323 73.7
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.1e-144 516.9 318 73.6
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 1.4e-144 516.5 320 72.8
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.4e-144 516.5 320 72.8
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 1.4e-144 516.5 320 72.2
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.4e-144 515.8 320 73.1
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 5.4e-144 514.6 320 73.1
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 7.1e-144 514.2 320 71.9
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 9.2e-144 513.8 318 73.3
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.2e-143 513.5 321 72.9
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.2e-143 513.5 318 73.3
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 1.6e-143 513.1 319 71.8
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.6e-143 513.1 320 72.5
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 7.8e-143 510.8 318 72.3
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.0e-142 510.4 321 72.9
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.0e-142 510.4 318 73.0
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 1.7e-142 509.6 319 73.4
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.7e-142 509.6 319 73.7
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.0e-142 508.8 318 71.1
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.9e-142 508.4 321 73.8
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.6e-142 507.7 321 71.0
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 6.6e-142 507.7 318 72.6
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 8.7e-142 507.3 319 72.7
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 1.1e-141 506.9 316 74.1
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.9e-141 506.1 311 74.9
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 4.3e-141 505.0 318 72.0
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 5.6e-141 504.6 319 71.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 9.6e-141 503.8 318 73.6
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 2.1e-140 502.7 321 70.7
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 2.8e-140 502.3 321 71.7
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 4.7e-140 501.5 321 72.3
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 6.2e-140 501.1 312 72.1
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 8.1e-140 500.7 321 71.7
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 1.4e-139 500.0 319 69.9
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.4e-139 500.0 313 71.9
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 1.4e-139 500.0 320 71.2
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 1.8e-139 499.6 321 72.0
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 6.9e-139 497.7 312 71.2
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 6.9e-139 497.7 318 72.0
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 1.2e-138 496.9 314 71.7
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 2.0e-138 496.1 318 72.0
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.4e-138 495.4 318 69.5
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 4.4e-138 495.0 319 69.3
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 5.8e-138 494.6 312 70.2
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 9.9e-138 493.8 319 70.5
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 9.9e-138 493.8 319 70.5
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 1.3e-137 493.4 308 72.7
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.7e-137 493.0 308 71.8
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.7e-137 493.0 319 72.4
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 2.2e-137 492.7 319 69.0
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 2.9e-137 492.3 319 69.9
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.9e-137 491.5 315 69.8
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 4.9e-137 491.5 307 73.6
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 6.4e-137 491.1 321 69.8
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 6.4e-137 491.1 312 71.5
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 6.4e-137 491.1 319 72.1
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 8.4e-137 490.7 312 72.4
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.4e-136 490.0 315 69.2
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.2e-136 488.8 318 70.8
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 3.2e-136 488.8 309 72.5
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 7.1e-136 487.6 321 71.7
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 7.1e-136 487.6 318 70.8
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 7.1e-136 487.6 319 69.9
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.2e-135 486.9 318 71.1
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.2e-135 486.9 319 69.6
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 7.8e-135 484.2 318 70.4
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 3.0e-134 482.3 312 69.9
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 3.9e-134 481.9 319 67.1
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 3.9e-134 481.9 301 71.4
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.9e-133 479.6 306 69.6
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.9e-133 479.6 318 68.9
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.9e-133 479.6 318 68.2
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 2.5e-133 479.2 304 70.4
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.6e-133 477.2 306 70.3
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 1.3e-132 476.9 303 69.3
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 2.1e-132 476.1 304 70.1
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 2.1e-132 476.1 317 67.8
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 2.8e-132 475.7 303 70.3
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 3.6e-132 475.3 303 69.3
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 4.8e-132 474.9 303 69.3
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.8e-132 474.9 303 70.0
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 1.1e-131 473.8 318 68.2
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.1e-131 472.2 303 69.0
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.3e-131 471.5 312 68.3
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 9.0e-131 470.7 308 69.2
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 9.0e-131 470.7 308 67.9
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 1.5e-130 469.9 303 69.3
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 4.5e-130 468.4 304 69.4
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 7.6e-130 467.6 306 68.6
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 9.9e-130 467.2 321 67.0
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.2e-129 466.1 321 65.4
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 3.8e-129 465.3 304 69.4
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.8e-129 465.3 305 68.9
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 4.9e-129 464.9 303 67.0
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-127 459.9 295 69.8
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.1e-127 459.5 305 65.6
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.6e-127 458.4 321 62.3
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 3.0e-126 455.7 288 72.2
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.9e-126 455.3 288 72.2
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 2.5e-125 452.6 306 63.7
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.6e-125 450.7 312 66.3
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 6.2e-124 448.0 304 63.8
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.2e-121 439.5 304 66.4
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 3.0e-118 429.1 306 65.4
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 3.0e-118 429.1 270 70.0
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.1e-116 422.9 320 59.1
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.1e-115 419.1 308 58.1
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 5.3e-115 418.3 279 68.5
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-114 417.2 306 63.4
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.7e-111 406.0 312 61.9
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.7e-111 406.0 281 66.2
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 3.5e-111 405.6 311 59.5
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 5.1e-110 401.7 318 58.5
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.8e-108 395.2 315 60.6
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.8e-108 395.2 315 60.6
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.1e-107 392.5 306 57.2
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 6.9e-107 391.3 228 76.8
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 3.8e-105 385.6 318 55.3
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 2.1e-103 379.8 219 76.3
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.8e-99 366.7 296 60.5
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.2e-97 359.8 305 53.8
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 4.2e-96 355.5 307 56.4
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 1.7e-84 317.0 313 47.6
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.2e-81 306.6 268 57.5
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.8e-68 262.3 307 45.9
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 4.2e-64 249.2 171 67.8
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.4e-59 233.4 260 46.9
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.3e-52 211.1 134 73.1
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 8.6e-49 198.4 129 65.1
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.4e-43 181.0 313 33.2
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.6e-42 177.6 111 72.1
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 1.9e-40 170.6 340 31.5
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 2.0e-29 134.0 344 28.2
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 2.6e-29 133.7 251 34.3
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.2e-27 126.7 96 58.3
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.6e-15 87.8 59 69.5
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 2.9e-12 77.0 74 52.7


User provided reference genes

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