Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G111150 Manihot esculenta HOM05D002294 ORTHO05D002367 4.4e-56 221.1 115 100.0
Manes.14G060000 Manihot esculenta HOM05D002294 ORTHO05D002367 2.2e-31 139.0 94 80.9
Cfa008892 Carpinus fangiana HOM05D000235 ORTHO05D000147 8.2e-26 120.6 90 68.9
RcHm_v2.0_Chr7g0192431 Rosa chinensis HOM05D002294 ORTHO05D002367 2.4e-25 119.0 90 71.1
FvH4_5g06380 Fragaria vesca HOM05D002294 ORTHO05D002367 3.1e-25 118.6 90 70.0
FAN08G2480 Fragaria x ananassa HOM05D002294 ORTHO05D002367 3.1e-25 118.6 90 71.1
FAN18G1540 Fragaria x ananassa HOM05D002294 ORTHO05D002367 3.1e-25 118.6 90 70.0
QL03p071250 Quercus lobata HOM05D002294 ORTHO05D002367 1.2e-24 116.7 90 68.9
RcHm_v2.0_Chr7g0192461 Rosa chinensis HOM05D002294 ORTHO05D002367 1.2e-24 116.7 90 68.9
Atru.chr9.2591 Acer truncatum HOM05D002294 ORTHO05D002367 2.6e-24 115.5 85 71.8
Dinv33811 Davidia involucrata HOM05D002294 ORTHO05D002367 3.4e-24 115.2 89 70.8
Aqoxy7G03961 Aquilegia oxysepala HOM05D002294 ORTHO05D002367 4.5e-24 114.8 89 73.0
QL10p006794 Quercus lobata HOM05D002294 ORTHO05D002367 7.6e-24 114.0 90 67.8
Dinv11485 Davidia involucrata HOM05D002294 ORTHO05D002367 1.0e-23 113.6 89 68.5
CANSAT64G2646 Cannabis sativa HOM05D002294 ORTHO05D002367 2.2e-23 112.5 85 68.2
Glyma.18G078700 Glycine max HOM05D002294 ORTHO05D002367 2.9e-23 112.1 85 70.6
Potri.012G086800 Populus trichocarpa HOM05D002294 ORTHO05D002367 3.8e-23 111.7 98 63.3
TAR374G1207 Trochodendron aralioides HOM05D002294 ORTHO05D002367 3.8e-23 111.7 86 69.8
GSVIVG01007636001 Vitis vinifera HOM05D002294 ORTHO05D002367 3.8e-23 111.7 89 66.3
Glyma.08G265900 Glycine max HOM05D002294 ORTHO05D002367 6.5e-23 110.9 85 69.4
Prupe.5G164800 Prunus persica HOM05D002294 ORTHO05D002367 8.4e-23 110.5 85 68.2
Sabra12G0062200 Salix brachista HOM05D002294 ORTHO05D002367 8.4e-23 110.5 98 63.3
Sc13g0003620 Simmondsia chinensis HOM05D002294 ORTHO05D002367 8.4e-23 110.5 80 70.0
FAN04G2356 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.1e-22 110.2 90 67.8
FAN13G0475 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.1e-22 110.2 90 67.8
Haze_17593 Corylus avellana HOM05D002294 ORTHO05D002367 1.4e-22 109.8 94 64.9
AUR62004210 Chenopodium quinoa HOM05D002294 ORTHO05D002367 3.2e-22 108.6 83 67.5
Haze_11924 Corylus avellana HOM05D002294 ORTHO05D002367 5.5e-22 107.8 96 61.5
Eucgr.B00214 Eucalyptus grandis HOM05D002294 ORTHO05D002367 5.5e-22 107.8 90 62.2
Hund17023 Selenicereus undatus HOM05D002294 ORTHO05D002367 5.5e-22 107.8 94 66.0
CSS0020221 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 9.3e-22 107.1 80 67.5
CiPaw.06G091400 Carya illinoinensis HOM05D002294 ORTHO05D002367 1.2e-21 106.7 85 67.1
Ciclev10022242m.g Citrus clementina HOM05D002294 ORTHO05D002367 1.2e-21 106.7 85 67.1
MD14G1170700 Malus domestica HOM05D002294 ORTHO05D002367 1.2e-21 106.7 90 62.2
Duzib205G0024 Durio zibethinus HOM05D002294 ORTHO05D002367 2.1e-21 105.9 81 71.6
Cfa015569 Carpinus fangiana HOM05D002294 ORTHO05D002367 2.7e-21 105.5 94 61.7
AUR62013638 Chenopodium quinoa HOM05D002294 ORTHO05D002367 4.6e-21 104.8 83 66.3
Ah.05g174260 Amaranthus hybridus HOM05D002294 ORTHO05D002367 6.1e-21 104.4 84 66.7
ECA248G3964 Erigeron canadensis HOM05D002294 ORTHO05D002367 6.1e-21 104.4 85 67.1
Psat7g123320 Pisum sativum HOM05D002294 ORTHO05D002367 6.1e-21 104.4 85 67.1
AUR62008066 Chenopodium quinoa HOM05D002294 ORTHO05D002367 7.9e-21 104.0 83 65.1
PGR083G1112 Punica granatum HOM05D002294 ORTHO05D002367 7.9e-21 104.0 88 65.9
Thhalv10014577m.g Eutrema salsugineum HOM05D002294 ORTHO05D002367 1.0e-20 103.6 83 65.1
Phvul.006G055700 Phaseolus vulgaris HOM05D002294 ORTHO05D002367 1.0e-20 103.6 84 66.7
Sopen01g003860 Solanum pennellii HOM05D002294 ORTHO05D002367 1.3e-20 103.2 92 64.1
A03p05170 Brassica napus HOM05D002294 ORTHO05D002367 1.8e-20 102.8 83 65.1
BraA03t09856Z Brassica rapa HOM05D002294 ORTHO05D002367 1.8e-20 102.8 83 65.1
Carub.0006s1028 Capsella rubella HOM05D002294 ORTHO05D002367 1.8e-20 102.8 83 61.4
Gohir.A07G056300 Gossypium hirsutum HOM05D002294 ORTHO05D002367 1.8e-20 102.8 81 70.4
Gohir.D07G060600 Gossypium hirsutum HOM05D002294 ORTHO05D002367 1.8e-20 102.8 81 70.4
Gohir.D12G188228 Gossypium hirsutum HOM05D002294 ORTHO05D002367 1.8e-20 102.8 81 70.4
Medtr3g058620 Medicago truncatula HOM05D002294 ORTHO05D002367 1.8e-20 102.8 85 68.2
EL10Ac1g00885 Beta vulgaris HOM05D002294 ORTHO05D002367 2.3e-20 102.4 87 63.2
ClCG01G013640 Citrullus lanatus HOM05D002294 ORTHO05D002367 2.3e-20 102.4 84 67.9
Nn7g38397 Nelumbo nucifera HOM05D002294 ORTHO05D002367 2.3e-20 102.4 58 89.7
VMungo0540G0960 Vigna mungo HOM05D002294 ORTHO05D002367 2.3e-20 102.4 85 64.7
Cpa.g.sc59.127 Carica papaya HOM05D002294 ORTHO05D002367 3.0e-20 102.1 85 65.9
TWI23G0110 Tripterygium wilfordii HOM05D002294 ORTHO05D002367 3.0e-20 102.1 88 62.5
AUR62028643 Chenopodium quinoa HOM05D002294 ORTHO05D002367 3.9e-20 101.7 82 64.6
Thecc.03G115800 Theobroma cacao HOM05D002294 ORTHO05D002367 3.9e-20 101.7 81 70.4
BolC3t13108H Brassica oleracea HOM05D002294 ORTHO05D002367 5.1e-20 101.3 83 63.9
CARHR201460 Cardamine hirsuta HOM05D002294 ORTHO05D002367 5.1e-20 101.3 84 64.3
CDE06G0567 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 5.1e-20 101.3 88 64.8
Lalb_Chr25g0286841 Lupinus albus HOM05D002294 ORTHO05D002367 5.1e-20 101.3 85 65.9
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 5.1e-20 101.3 92 63.0
BcaB01g05457 Brassica carinata HOM05D002294 ORTHO05D002367 6.7e-20 100.9 83 62.7
Hma1.2p1_0221F.1_g093080 Hydrangea macrophylla HOM05D002294 ORTHO05D002367 6.7e-20 100.9 80 66.2
Solyc01g008340.3 Solanum lycopersicum HOM05D002294 ORTHO05D002367 6.7e-20 100.9 92 63.0
Nn1g09140 Nelumbo nucifera HOM05D002294 ORTHO05D002367 8.7e-20 100.5 92 63.0
Lj6g0017256 Lotus japonicus HOM05D002294 ORTHO05D002367 1.1e-19 100.1 85 65.9
CDE04G0585 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 1.9e-19 99.4 80 70.0
ECA232G0941 Erigeron canadensis HOM05D002294 ORTHO05D002367 1.9e-19 99.4 78 69.2
Lsat_1_v5_gn_4_77441 Lactuca sativa HOM05D002294 ORTHO05D002367 1.9e-19 99.4 83 62.7
MD06G1165200 Malus domestica HOM05D002294 ORTHO05D002367 1.9e-19 99.4 91 60.4
THA.LOC104806036 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 1.9e-19 99.4 80 68.8
C03p05970 Brassica napus HOM05D002294 ORTHO05D002367 2.5e-19 99.0 81 64.2
Ca_20195_v3 Cicer arietinum L. HOM05D002294 ORTHO05D002367 2.5e-19 99.0 81 63.0
CsaV3_1G014020 Cucumis sativus L. HOM05D000724 ORTHO05D002367 3.3e-19 98.6 84 66.7
Sed0010894 Sechium edule HOM05D002294 ORTHO05D002367 4.3e-19 98.2 84 65.5
Peaxi162Scf00021g02521 Petunia axillaris HOM05D002294 ORTHO05D002367 5.7e-19 97.8 84 66.7
THA.LOC104824989 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 5.7e-19 97.8 80 68.8
Aa31LG3G15460 Aethionema arabicum HOM05D002294 ORTHO05D002367 7.4e-19 97.4 88 59.1
arahy.Tifrunner.gnm1.ann1.D3JFX3 Arachis hypogaea HOM05D002294 ORTHO05D002367 7.4e-19 97.4 91 63.7
Sp6g31850 Schrenkiella parvula HOM05D002294 ORTHO05D002367 7.4e-19 97.4 83 61.4
THA.LOC104817995 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 7.4e-19 97.4 83 67.5
BcaC04g19197 Brassica carinata HOM05D002294 ORTHO05D002367 9.7e-19 97.1 95 57.9
BcaNung02655 Brassica carinata HOM05D002294 ORTHO05D002367 9.7e-19 97.1 83 63.9
MELO3C004891.2 Cucumis melo HOM05D002294 ORTHO05D002367 9.7e-19 97.1 85 65.9
Nitab4.5_0009336g0020 Nicotiana tabacum HOM05D002294 ORTHO05D002367 1.6e-18 96.3 89 61.8
Nitab4.5_0000069g0090 Nicotiana tabacum HOM05D002294 ORTHO05D002367 2.2e-18 95.9 89 61.8
A10p25980 Brassica napus HOM05D002294 ORTHO05D002367 3.7e-18 95.1 95 57.9
HanXRQChr16g0504741 Helianthus annuus HOM05D002294 ORTHO05D002367 3.7e-18 95.1 81 63.0
Sed0005556 Sechium edule HOM05D002294 ORTHO05D002367 3.7e-18 95.1 84 65.5
DCAR_026178 Daucus carota HOM05D002294 ORTHO05D002367 4.8e-18 94.7 81 65.4
CAN.G282.40 Capsicum annuum HOM05D002294 ORTHO05D002367 6.3e-18 94.4 73 67.1
PSO017G4224 Papaver somniferum HOM05D002294 ORTHO05D002367 8.2e-18 94.0 111 54.1
AT1G24240 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 1.1e-17 93.6 83 63.9
AT4G11630 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 1.1e-17 93.6 83 61.4
A02p01180 Brassica napus HOM05D002294 ORTHO05D002367 1.1e-17 93.6 83 62.7
BraA02t05097Z Brassica rapa HOM05D002294 ORTHO05D002367 1.1e-17 93.6 83 63.9
TPR.G30742 Trifolium pratense HOM05D002294 ORTHO05D002367 1.1e-17 93.6 85 63.5
COL.COLO4_32207 Corchorus olitorius HOM05D002294 ORTHO05D002367 1.8e-17 92.8 66 75.8
PSO063G0733 Papaver somniferum HOM05D002294 ORTHO05D002367 1.8e-17 92.8 110 51.8
AL6G22500 Arabidopsis lyrata HOM05D002294 ORTHO05D002367 2.4e-17 92.4 83 62.7
Haze_11976 Corylus avellana HOM05D002294 ORTHO05D002367 2.4e-17 92.4 84 61.9
unitig_61.g26471 Utricularia gibba HOM05D002294 ORTHO05D002367 2.4e-17 92.4 61 75.4
Oeu040866.1 Olea europaea HOM05D002294 ORTHO05D002367 3.1e-17 92.0 53 84.9
PSO675G6677 Papaver somniferum HOM05D002294 ORTHO05D002367 3.1e-17 92.0 110 50.9
C09p65060 Brassica napus HOM05D002294 ORTHO05D002367 6.9e-17 90.9 95 56.8
ATR0057G012 Amborella trichopoda HOM05D002294 ORTHO05D002367 2.0e-16 89.4 69 66.7
CSS0000839 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 2.0e-16 89.4 72 66.7
BolC9t59334H Brassica oleracea HOM05D002294 ORTHO05D002367 3.4e-16 88.6 106 51.9
HPP92_022648 Vanilla planifolia HOM05D002294 ORTHO05D002367 5.9e-16 87.8 53 75.5
HPP92_022668 Vanilla planifolia HOM05D002294 ORTHO05D002367 5.9e-16 87.8 53 75.5
SGA_v2.0_scaffold25G10794 Striga asiatica HOM05D002294 ORTHO05D002367 7.7e-16 87.4 64 71.9
Migut.O00165 Erythranthe guttata HOM05D002294 ORTHO05D002367 1.0e-15 87.0 73 63.0
BraA10t44660Z Brassica rapa HOM05D002294 ORTHO05D002367 3.8e-15 85.1 110 50.0
SEGI_18760 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 3.8e-15 85.1 89 57.3
SEGI_39712 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 3.8e-15 85.1 86 58.1
Gorai.001G064300 Gossypium raimondii HOM05D002294 ORTHO05D002367 5.0e-15 84.7 81 63.0
SEGI_23439 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 5.0e-15 84.7 89 56.2
SalBow5G4275 Salvia bowleyana HOM05D002294 ORTHO05D002367 1.9e-14 82.8 98 51.0
Zm00001eb260530 Zea mays HOM05D002294 ORTHO05D002367 3.2e-14 82.0 82 52.4
AT5G11750 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 7.2e-14 80.9 104 49.0
Zm00001eb174060 Zea mays HOM05D002294 ORTHO05D002367 9.4e-14 80.5 81 51.9
Ca_03374_v3 Cicer arietinum L. HOM05D002294 ORTHO05D002367 1.4e-12 76.6 79 55.7
Os02g0205000 Oryza sativa ssp. japonica HOM05D002294 ORTHO05D002367 1.4e-12 76.6 80 51.2
Lj1A261T33 Lonicera japonica HOM05D002294 ORTHO05D002367 1.8e-12 76.3 89 49.4
DCAR_016450 Daucus carota HOM05D002294 ORTHO05D002367 2.8e-10 68.9 40 80.0
arahy.Tifrunner.gnm1.ann1.171W8J Arachis hypogaea HOM05D002294 ORTHO05D002367 6.3e-10 67.8 41 80.5
Gorai.008G201800 Gossypium raimondii HOM05D002294 ORTHO05D002367 1.1e-09 67.0 45 71.1
AagrBONN_evm.TU.Sc2ySwM_368.1767 Anthoceros agrestis HOM05D002294 ORTHO05D002367 1.4e-09 66.6 53 64.2
Pp3c24_12530 Physcomitrium patens HOM05D002294 ORTHO05D002367 2.4e-09 65.9 89 42.7
QL03p071280 Quercus lobata HOM05D002294 ORTHO05D002367 2.4e-09 65.9 81 50.6
Rhsim12G0168300 Rhododendron simsii HOM05D002294 ORTHO05D002367 3.1e-09 65.5 38 81.6
vmacro16647 Vaccinium macrocarpon HOM05D002294 ORTHO05D002367 3.1e-09 65.5 39 79.5
Rhsim01G0251600 Rhododendron simsii HOM05D002294 ORTHO05D002367 4.1e-09 65.1 80 48.8
unitig_0.g1422 Utricularia gibba HOM05D002294 ORTHO05D002367 1.5e-08 63.2 46 69.6
Pp3c23_6090 Physcomitrium patens HOM05D002294 ORTHO05D002367 2.6e-08 62.4 84 42.9
Cc04_g11410 Coffea canephora HOM05D002294 ORTHO05D002367 3.4e-08 62.0 81 48.1
MBI17_g44276_MAGBIO Magnolia biondii HOM05D002294 ORTHO05D002367 7.7e-08 60.8 67 52.2
RcHm_v2.0_Chr1g0313261 Rosa chinensis HOM05D002294 ORTHO05D002367 1.0e-07 60.5 39 76.9
Migut.F01248 Erythranthe guttata HOM05D002294 ORTHO05D002367 1.7e-07 59.7 52 59.6
MBI09_g37134_MAGBIO Magnolia biondii HOM05D002294 ORTHO05D002367 1.7e-07 59.7 80 47.5
Pp3c20_16950 Physcomitrium patens HOM05D002294 ORTHO05D002367 8.5e-07 57.4 84 40.5
CDE12G0112 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 2.5e-06 55.8 48 60.4
Mapoly0007s0262 Marchantia polymorpha HOM05D002294 ORTHO05D002367 3.2e-06 55.5 83 38.6
CBR_g51380 Chara braunii HOM05D002294 ORTHO05D002367 4.2e-06 55.1 70 42.9


User provided reference genes

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