Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 1.2e-89 333.2 171 100.0
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 4.6e-17 92.0 96 61.5
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 7.9e-17 91.3 97 57.7
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 7.4e-15 84.7 112 51.8
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 2.8e-14 82.8 103 47.6
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 3.7e-14 82.4 98 54.1
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 4.1e-13 79.0 104 50.0
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 4.1e-13 79.0 103 49.5
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 9.0e-13 77.8 167 39.5
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 3.4e-12 75.9 104 47.1
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 1.7e-11 73.6 107 45.8
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 2.2e-11 73.2 104 47.1
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 8.4e-11 71.2 100 49.0
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 1.1e-10 70.9 99 51.5
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 1.9e-10 70.1 71 59.2
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 2.5e-10 69.7 87 46.0
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.2e-10 69.3 93 47.3
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 4.2e-10 68.9 82 52.4
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 4.2e-10 68.9 96 46.9
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 5.5e-10 68.6 74 51.4
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 7.1e-10 68.2 96 45.8
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 9.3e-10 67.8 86 45.3
Carub.0008s1019 Capsella rubella HOM05D008378 ORTHO05D010346 1.2e-09 67.4 109 44.0
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 1.6e-09 67.0 91 42.9
BcaC01g04828 Brassica carinata HOM05D008378 ORTHO05D010346 1.6e-09 67.0 108 46.3
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 1.6e-09 67.0 54 66.7
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 1.6e-09 67.0 104 43.3
C03p33390 Brassica napus HOM05D008378 ORTHO05D010346 2.7e-09 66.2 108 46.3
BolC3t15661H Brassica oleracea HOM05D008378 ORTHO05D010346 2.7e-09 66.2 108 46.3
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 2.7e-09 66.2 100 44.0
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 3.5e-09 65.9 104 43.3
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.5e-09 65.9 93 45.2
AT5G50175 Arabidopsis thaliana HOM05D008378 ORTHO05D010346 4.6e-09 65.5 113 41.6
A03p27680 Brassica napus HOM05D008378 ORTHO05D010346 4.6e-09 65.5 108 46.3
BraA03t11981Z Brassica rapa HOM05D008378 ORTHO05D010346 4.6e-09 65.5 108 46.3
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 4.6e-09 65.5 61 59.0
AL8G24190 Arabidopsis lyrata HOM05D008378 ORTHO05D010346 7.9e-09 64.7 112 41.1
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.0e-08 64.3 76 50.0
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 1.3e-08 63.9 85 45.9
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 1.3e-08 63.9 57 59.6
BcaB01g02914 Brassica carinata HOM05D008378 ORTHO05D010346 1.8e-08 63.5 108 44.4
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.8e-08 63.5 85 47.1
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.8e-08 63.5 95 42.1
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 3.0e-08 62.8 101 39.6
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 3.0e-08 62.8 75 48.0
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 6.7e-08 61.6 72 51.4
Aa31sc170G40 Aethionema arabicum HOM05D008378 ORTHO05D010346 8.7e-08 61.2 103 40.8
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 8.7e-08 61.2 86 45.3
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.5e-07 60.5 76 46.1
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.5e-07 60.5 72 50.0
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.5e-07 60.5 72 50.0
CARHR258450 Cardamine hirsuta HOM05D008378 ORTHO05D010346 1.9e-07 60.1 105 42.9
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.9e-07 60.1 76 46.1
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 2.5e-07 59.7 74 48.6
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 2.5e-07 59.7 74 48.6
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 2.5e-07 59.7 89 42.7
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 2.5e-07 59.7 75 45.3
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.5e-07 59.7 76 47.4
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 2.5e-07 59.7 107 35.5
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.5e-07 59.7 89 44.9
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 3.3e-07 59.3 85 43.5
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 3.3e-07 59.3 95 40.0
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.3e-07 59.3 107 34.6
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 4.3e-07 58.9 87 46.0
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 4.3e-07 58.9 69 47.8
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 4.3e-07 58.9 107 40.2
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 5.7e-07 58.5 85 44.7
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 7.4e-07 58.2 48 62.5
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 7.4e-07 58.2 108 42.6
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 7.4e-07 58.2 108 42.6
PSO754G0065 Papaver somniferum HOM05D008378 ORTHO05D010346 7.4e-07 58.2 122 35.2
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.4e-07 58.2 89 44.9
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 9.7e-07 57.8 74 44.6
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 1.3e-06 57.4 70 50.0
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 1.3e-06 57.4 100 43.0
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.3e-06 57.4 72 45.8
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 1.3e-06 57.4 72 47.2
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.3e-06 57.4 72 47.2
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.3e-06 57.4 72 47.2
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.3e-06 57.4 72 47.2
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 1.3e-06 57.4 74 45.9
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 1.6e-06 57.0 103 42.7
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.6e-06 57.0 87 46.0
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 2.2e-06 56.6 74 44.6
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 2.2e-06 56.6 105 36.2
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.2e-06 56.6 88 43.2
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.2e-06 56.6 74 45.9
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 2.8e-06 56.2 95 40.0
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 2.8e-06 56.2 95 42.1
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 2.8e-06 56.2 76 44.7
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.8e-06 56.2 74 41.9
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.8e-06 56.2 76 42.1
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.8e-06 56.2 76 42.1
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 2.8e-06 56.2 47 55.3
PGSC0003DMG400027074 Solanum tuberosum HOM05D008378 ORTHO05D010346 2.8e-06 56.2 62 51.6
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 3.7e-06 55.8 70 45.7
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 3.7e-06 55.8 81 44.4
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 3.7e-06 55.8 45 64.4
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 4.8e-06 55.5 50 54.0
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 4.8e-06 55.5 87 43.7
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 4.8e-06 55.5 72 47.2
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 6.3e-06 55.1 85 37.6
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 6.3e-06 55.1 70 47.1
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 6.3e-06 55.1 99 39.4
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 6.3e-06 55.1 72 44.4
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 8.2e-06 54.7 155 31.6
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 8.2e-06 54.7 75 40.0
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 8.2e-06 54.7 155 31.6
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 8.2e-06 54.7 75 40.0
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 8.2e-06 54.7 87 42.5


User provided reference genes

Program Settings