Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.2e-160 568.9 297 100.0
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 7.3e-95 351.3 291 64.9
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.0e-93 345.5 301 63.1
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.9e-91 338.6 302 63.2
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 1.9e-87 326.6 326 58.6
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.3e-86 323.9 329 55.9
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 2.1e-86 323.2 327 57.2
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 5.3e-85 318.5 334 56.0
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.5e-84 317.0 306 59.2
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 3.4e-84 315.8 321 57.9
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 4.9e-83 312.0 293 59.4
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.2e-81 307.4 302 57.6
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.6e-81 307.0 306 57.8
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 1.6e-81 307.0 341 52.5
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 2.7e-81 306.2 321 57.0
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 6.0e-81 305.1 333 54.1
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 6.0e-81 305.1 308 57.1
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.3e-80 303.9 297 58.9
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.8e-80 303.5 297 58.6
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.9e-80 302.4 302 57.0
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 3.9e-80 302.4 311 55.3
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.9e-80 302.4 343 53.6
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.1e-80 302.0 310 55.8
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 8.7e-80 301.2 305 57.4
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.1e-79 300.8 304 56.9
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.5e-79 300.4 345 51.3
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 1.9e-79 300.1 307 56.0
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 7.4e-79 298.1 315 54.3
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.6e-78 297.0 309 55.0
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.8e-78 296.2 305 57.0
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 4.8e-78 295.4 301 55.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.1e-77 294.3 278 59.7
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 3.1e-77 292.7 304 55.3
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.3e-77 292.0 303 53.5
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.2e-76 290.8 336 50.9
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.5e-76 290.4 286 59.1
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 5.8e-76 288.5 305 56.1
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 7.6e-76 288.1 305 53.1
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.2e-75 286.6 302 54.3
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 2.9e-75 286.2 305 53.1
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 6.5e-75 285.0 307 55.0
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.1e-74 284.3 306 52.3
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.5e-74 283.1 304 53.0
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.5e-74 282.0 302 52.6
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.3e-72 276.6 280 55.4
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 3.0e-72 276.2 302 51.3
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 8.7e-72 274.6 300 51.7
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.9e-71 273.5 300 51.3
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.9e-71 273.5 306 52.0
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 4.3e-71 272.3 302 49.3
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.3e-70 270.8 309 51.1
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.8e-70 269.6 303 52.8
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 4.8e-70 268.9 304 52.3
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 4.8e-70 268.9 300 50.7
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 6.3e-70 268.5 306 53.6
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.1e-69 267.7 306 52.0
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 1.8e-69 266.9 306 52.9
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 9.0e-69 264.6 297 50.2
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.2e-68 264.2 302 51.3
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 3.4e-68 262.7 302 51.3
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 4.5e-68 262.3 297 55.2
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 5.9e-68 261.9 298 49.7
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.3e-67 260.8 314 50.6
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 5.0e-67 258.8 334 49.1
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 2.5e-66 256.5 304 48.7
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 4.2e-66 255.8 298 50.0
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 5.5e-66 255.4 297 51.2
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.2e-65 254.2 306 51.0
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.2e-65 254.2 301 49.8
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 4.6e-65 252.3 298 50.0
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.0e-64 251.1 304 47.0
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.4e-64 250.8 301 50.5
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 3.0e-64 249.6 298 50.3
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 3.9e-64 249.2 303 47.2
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.1e-64 248.8 303 50.2
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 6.7e-64 248.4 306 46.7
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 8.8e-64 248.1 306 48.4
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 9.7e-63 244.6 364 43.1
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.2e-62 243.4 306 46.1
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 4.8e-62 242.3 301 50.5
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 8.2e-62 241.5 250 52.8
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.1e-61 239.6 273 52.4
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 9.1e-61 238.0 302 46.7
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.5e-60 237.3 304 48.7
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.5e-60 237.3 324 45.1
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.6e-60 236.5 293 47.1
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.0e-59 234.6 315 43.2
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.9e-59 233.0 302 49.7
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.8e-59 232.6 296 47.0
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.8e-59 232.6 325 44.6
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.0e-59 232.3 228 54.4
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 5.0e-59 232.3 286 51.4
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.2e-58 229.6 303 46.2
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 4.2e-58 229.2 298 45.6
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 9.4e-58 228.0 305 45.2
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.2e-57 227.6 259 53.7
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.7e-57 226.5 307 46.9
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 3.6e-57 226.1 321 42.7
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 4.7e-57 225.7 305 46.6
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.8e-56 223.8 305 45.6
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.8e-56 223.8 307 44.3
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.8e-56 223.8 302 44.7
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.3e-56 223.4 305 45.2
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 3.0e-56 223.0 300 44.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 3.9e-56 222.6 300 44.0
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 6.7e-56 221.9 275 46.9
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 6.7e-56 221.9 292 45.5
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.5e-55 220.7 246 49.2
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 2.6e-55 219.9 305 44.6
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.3e-55 219.5 310 43.9
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 5.7e-55 218.8 302 45.4
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 9.7e-55 218.0 234 55.6
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 9.7e-55 218.0 224 50.9
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.6e-52 209.9 291 43.6
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 5.9e-52 208.8 301 44.2
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 7.7e-52 208.4 291 43.0
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 5.0e-51 205.7 301 43.9
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.0e-48 198.0 292 41.1
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 4.4e-47 192.6 193 56.0
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.2e-44 184.5 233 48.1
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.6e-44 184.1 233 48.1
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.3e-43 181.0 224 48.7
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.3e-43 181.0 183 55.7
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.9e-42 177.2 304 39.5
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.8e-40 168.7 289 37.0
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 2.2e-38 163.7 251 43.4
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 9.1e-37 158.3 282 38.3
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.0e-35 154.8 323 35.0
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.2e-35 153.7 132 59.1
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.8e-35 152.9 290 35.5
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 3.8e-35 152.9 212 39.6
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.7e-33 146.7 223 43.9
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.7e-33 146.7 294 33.0
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 9.1e-29 131.7 147 45.6
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.0e-28 130.6 223 33.6
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 1.0e-24 118.2 251 30.3
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 4.0e-24 116.3 148 48.0
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.8e-21 107.5 169 42.6
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 3.2e-21 106.7 135 42.2
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 5.9e-20 102.4 95 60.0
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 5.9e-20 102.4 221 34.4
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.0e-19 101.7 185 37.3
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 5.0e-19 99.4 218 33.9
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 8.0e-17 92.0 175 34.3
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 2.6e-15 87.0 199 32.2
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.7e-14 83.2 72 56.9
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 1.0e-11 75.1 100 43.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.3e-11 74.7 113 36.3
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 7.3e-10 68.9 175 26.9
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 6.2e-09 65.9 66 47.0
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.1e-08 65.1 170 27.6
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.3e-06 58.2 195 25.1


User provided reference genes

Program Settings