Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 3075.8 1631 100.0
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 2432.9 1647 81.2
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1384.4 1659 53.1
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1358.2 1720 50.8
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1345.9 1658 51.9
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1293.9 1652 50.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1261.9 1708 48.9
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1212.6 1660 48.7
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1212.6 1660 48.9
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1208.7 1640 48.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1201.8 1680 47.5
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1194.1 1684 48.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1188.7 1662 48.2
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1157.1 1715 46.5
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1146.3 1679 47.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1137.5 1682 46.3
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1119.8 1667 46.2
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1119.8 1689 46.2
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 1119.4 1664 45.4
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1118.2 1762 43.7
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1102.8 1668 44.7
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 0.0e+00 1102.4 1660 45.1
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1099.0 1680 45.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1087.4 1684 45.7
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 4.9e-310 1068.5 1657 45.4
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.1e-304 1050.8 1662 43.3
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 6.5e-302 1041.6 1678 44.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.6e-300 1036.9 1669 43.0
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 4.6e-300 1035.4 1671 44.0
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.4e-296 1023.8 1677 42.3
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.4e-293 1013.8 1655 42.7
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 7.9e-292 1008.1 1662 43.8
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.7e-290 1001.9 1661 42.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.3e-286 990.7 1679 42.6
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.7e-286 990.3 1667 42.3
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.2e-286 989.9 1663 41.7
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.9e-285 986.9 1668 42.6
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 3.6e-284 982.6 1678 42.7
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 4.4e-282 975.7 1473 45.6
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-269 934.5 1717 41.1
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.5e-269 934.1 1653 41.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 2.6e-266 923.3 1693 42.2
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.5e-261 906.7 1668 40.8
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 3.3e-261 906.4 1665 41.4
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.4e-256 891.0 1666 41.6
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 9.2e-256 888.3 1665 40.2
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.2e-255 887.9 1647 41.6
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.6e-255 887.5 1673 40.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 8.9e-251 871.7 1664 42.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.8e-250 869.0 1529 41.9
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 4.6e-247 859.4 1660 40.2
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.6e-242 843.6 1691 39.7
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.3e-241 841.3 1678 39.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.4e-240 837.8 1676 38.4
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.6e-239 832.8 1661 39.0
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 2.8e-236 823.5 1675 39.2
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.6e-236 823.2 1713 37.9
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 3.1e-235 820.1 1672 37.9
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 5.2e-235 819.3 1674 39.8
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 2.2e-233 813.9 1660 37.7
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 6.4e-233 812.4 1668 39.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.1e-231 807.4 1680 37.9
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 4.6e-231 806.2 1656 39.4
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.8e-228 797.0 1723 38.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.6e-220 771.2 1678 36.9
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.8e-219 767.7 1659 37.7
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.4e-218 763.1 1672 37.8
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.3e-217 761.5 1668 38.3
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.4e-216 757.3 1663 36.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.2e-215 755.0 1660 36.1
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 8.1e-212 742.3 1685 36.7
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.2e-210 738.4 1685 36.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 4.5e-210 736.5 1707 37.6
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.9e-208 731.1 1669 36.2
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.0e-206 725.3 1685 36.0
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.8e-206 724.5 1458 38.5
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.9e-205 721.1 1647 37.9
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.3e-205 720.3 1811 36.6
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 2.1e-204 717.6 1654 36.6
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 8.1e-204 715.7 1664 37.9
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 6.9e-203 712.6 1671 36.5
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 7.1e-200 702.6 1689 35.8
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.0e-198 698.7 1671 35.2
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.9e-197 694.5 1362 39.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 2.9e-193 680.6 1651 35.9
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 8.4e-193 679.1 1644 35.3
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.2e-185 654.4 1643 34.8
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 9.4e-184 649.0 1710 35.0
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 3.6e-183 647.1 1678 34.8
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.4e-179 634.4 1239 38.4
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 3.2e-176 624.0 1677 34.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 9.4e-176 622.5 1671 34.8
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 4.7e-175 620.2 1665 35.6
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.3e-172 612.1 1667 34.3
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 8.2e-172 609.4 1654 35.0
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 7.0e-171 606.3 1784 33.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.0e-169 602.4 1678 34.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.3e-169 602.1 1790 33.2
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.5e-169 599.7 1668 34.4
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 9.4e-168 595.9 1689 34.0
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.2e-167 595.5 1688 33.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 8.0e-167 592.8 1692 33.8
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.0e-166 590.9 1670 34.3
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 6.7e-166 589.7 1671 34.4
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.0e-154 551.6 1272 37.8
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.1e-152 545.8 1408 34.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.5e-152 545.4 1642 32.0
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 4.7e-151 540.4 1655 32.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 4.0e-150 537.3 774 44.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.0e-146 525.0 1679 32.0
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.3e-145 522.3 1697 33.3
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 3.8e-145 520.8 1679 32.0
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.2e-143 515.8 1658 32.2
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 5.2e-142 510.4 1647 32.4
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 6.8e-142 510.0 1673 32.3
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 3.7e-132 477.6 1499 34.0
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.9e-132 477.2 1552 32.4
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 6.6e-129 466.8 1644 30.6
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.5e-128 464.9 1034 37.7
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.9e-121 441.0 1616 29.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 5.1e-121 440.7 733 43.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 3.4e-117 427.9 1722 30.3
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.7e-116 424.5 1654 31.3
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.2e-110 404.1 335 66.9
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-93 349.0 686 38.3
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.4e-78 299.7 1701 27.9
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.4e-78 298.9 1523 28.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.2e-75 288.1 482 42.9
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.2e-74 286.6 193 78.8
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.5e-72 279.6 1645 26.6
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.6e-69 268.9 836 33.1
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.5e-64 252.3 204 67.6
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.2e-60 239.2 481 39.3
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.0e-57 228.8 1522 27.8
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 9.7e-56 223.8 1622 26.8
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 4.8e-55 221.5 1513 26.4
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.0e-54 217.6 263 52.5
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.8e-52 211.8 209 62.2
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.4e-49 203.4 1606 25.0
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.1e-38 165.6 365 37.0
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.4e-30 138.3 88 79.5
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.3e-23 117.1 176 44.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.2e-23 116.3 1612 22.5
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 3.2e-22 112.5 1640 25.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.7e-21 109.4 1409 26.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.0e-20 107.5 488 36.1
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.8e-18 99.4 172 42.4
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.3e-17 96.3 238 39.1
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.1e-17 95.9 258 31.4
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 5.8e-16 91.7 472 29.2
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.2e-15 89.7 137 42.3
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 6.4e-15 88.2 150 40.0
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-14 87.0 183 38.8
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.4e-14 85.1 1412 24.2
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 5.4e-14 85.1 159 41.5
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 1.9e-11 76.6 108 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 2.5e-11 76.3 1041 25.5
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 6.2e-10 71.6 491 28.3
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.3e-09 69.7 209 30.6
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-06 60.5 169 36.7


User provided reference genes

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