Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 4.3e-192 674.5 337 100.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.2e-124 449.5 344 66.3
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.3e-119 433.7 306 75.5
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.7e-119 432.2 344 66.3
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 9.1e-118 427.6 355 63.4
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.6e-117 426.8 344 65.1
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.7e-111 406.8 345 62.3
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.4e-110 403.7 345 61.7
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.8e-110 403.3 346 62.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 6.6e-108 394.8 345 61.4
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 3.3e-107 392.5 345 59.1
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 4.3e-107 392.1 344 60.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.5e-104 383.6 345 60.9
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 3.4e-104 382.5 347 57.6
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.3e-103 380.6 345 60.0
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 4.9e-103 378.6 345 60.0
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.6e-101 373.6 345 56.8
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 6.0e-101 371.7 347 56.2
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 6.6e-100 368.2 355 58.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.5e-99 366.3 344 57.3
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 7.3e-99 364.8 344 55.8
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.8e-98 362.8 344 55.2
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 6.8e-97 358.2 347 53.3
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 5.8e-96 355.1 339 55.5
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.8e-96 355.1 344 54.7
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 7.5e-96 354.8 345 55.7
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 7.5e-96 354.8 341 56.9
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.8e-96 354.4 347 53.0
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.7e-95 353.6 345 56.8
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.9e-95 352.8 346 53.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.4e-95 351.7 344 55.5
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.1e-94 350.9 346 52.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-94 350.9 344 56.7
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-94 350.5 346 52.3
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 5.4e-94 348.6 344 56.4
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.1e-94 348.2 347 52.2
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.7e-93 346.3 344 53.2
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.6e-92 341.3 345 54.5
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.5e-91 340.5 344 54.7
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.5e-91 340.5 351 51.3
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.5e-91 340.5 351 51.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 4.3e-91 339.0 351 51.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 9.5e-91 337.8 345 54.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-90 337.4 345 53.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 6.2e-90 335.1 346 54.6
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 8.1e-90 334.7 347 52.7
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.1e-89 334.3 351 51.3
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 5.2e-89 332.0 292 62.0
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.2e-88 330.9 350 53.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.4e-88 328.9 344 53.8
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 7.6e-88 328.2 345 53.0
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 7.6e-88 328.2 346 51.2
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.7e-87 327.0 346 49.4
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.2e-87 326.6 345 52.8
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.9e-87 326.2 342 52.6
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 4.9e-87 325.5 352 48.0
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.9e-86 323.6 337 50.1
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.1e-86 322.4 348 52.0
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 4.1e-86 322.4 346 52.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 5.4e-86 322.0 346 54.6
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 9.2e-86 321.2 345 51.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-85 320.9 342 49.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.2e-85 320.9 344 51.5
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-85 320.9 345 51.9
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 3.5e-85 319.3 345 51.6
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.6e-85 318.9 344 51.2
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.9e-84 315.8 341 52.2
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.9e-84 315.8 341 52.2
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 6.6e-84 315.1 342 48.2
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.5e-83 313.9 345 52.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.3e-83 312.8 345 51.6
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 9.6e-83 311.2 345 51.0
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.1e-82 310.1 347 51.0
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.7e-82 308.9 346 49.4
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.7e-82 308.9 346 52.0
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 8.1e-82 308.1 335 51.6
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.4e-81 307.4 345 50.1
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.4e-81 307.4 349 51.3
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 4.0e-81 305.8 345 50.4
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 8.9e-81 304.7 345 51.0
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.0e-80 303.5 344 48.5
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.6e-80 303.1 345 50.7
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 2.6e-80 303.1 344 48.3
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 3.4e-80 302.8 343 49.9
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 3.4e-80 302.8 345 50.4
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 5.8e-80 302.0 345 50.4
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.3e-79 300.8 334 50.9
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.8e-79 299.3 347 52.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 6.4e-79 298.5 345 47.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 8.4e-79 298.1 322 51.2
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.2e-78 295.8 326 50.6
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 4.6e-77 292.4 344 47.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 6.0e-77 292.0 345 48.4
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.0e-76 291.2 334 48.5
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.0e-76 289.7 308 51.9
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 6.6e-76 288.5 291 51.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.6e-76 288.5 310 51.6
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.1e-75 287.7 349 48.1
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.9e-75 287.0 345 48.4
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.3e-75 286.2 310 51.9
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 4.3e-75 285.8 337 49.9
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.3e-75 285.8 345 47.2
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.3e-75 285.8 323 49.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.1e-74 283.5 306 50.7
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.1e-74 283.5 346 47.7
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.1e-74 283.5 345 47.0
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.8e-74 283.1 346 47.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 6.2e-74 282.0 260 58.8
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 8.1e-74 281.6 344 49.1
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.4e-73 280.8 345 44.3
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 4.0e-73 279.3 345 48.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.0e-73 279.3 345 49.3
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-72 277.7 345 47.0
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.6e-72 276.6 308 50.6
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 3.4e-72 276.2 346 46.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-71 272.7 339 46.9
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.9e-71 272.3 338 48.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 7.1e-70 268.5 292 51.4
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.7e-69 266.5 345 45.8
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 4.6e-69 265.8 337 44.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 6.0e-69 265.4 343 45.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.7e-68 263.8 332 47.3
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.1e-68 262.3 327 48.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.6e-68 261.9 324 45.4
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-67 261.2 345 44.3
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.5e-67 260.0 337 47.2
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.6e-66 256.1 334 46.7
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 3.8e-63 246.1 345 42.9
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.4e-62 244.2 284 48.2
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.1e-59 234.6 327 44.0
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.6e-58 230.7 331 42.0
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 5.8e-56 222.2 305 43.6
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.7e-53 213.4 331 38.4
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.9e-51 207.2 343 37.6
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-49 201.1 339 37.8
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-48 198.0 137 69.3
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 4.5e-48 196.1 200 54.0
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.8e-47 193.0 343 37.3
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.3e-44 183.7 137 66.4
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.7e-44 182.2 129 67.4
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.3e-43 179.5 239 43.9
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.2e-37 161.4 212 42.0
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 5.7e-35 152.5 282 38.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.2e-34 150.6 325 36.6
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.1e-25 120.2 103 58.3
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 8.0e-21 105.5 126 43.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.4e-12 78.2 210 29.5
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 1.0e-07 62.0 206 29.6
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 1.1e-06 58.5 223 25.6


User provided reference genes

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