Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 2.4e-162 575.5 300 100.0
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 1.2e-124 450.3 301 78.1
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 1.2e-124 450.3 301 78.1
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 1.5e-124 449.9 259 87.6
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 2.2e-123 446.0 259 86.9
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 4.9e-123 444.9 282 79.1
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 6.4e-123 444.5 270 80.4
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 8.4e-123 444.1 276 81.5
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 3.2e-122 442.2 301 75.4
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 4.2e-122 441.8 270 80.7
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 5.5e-122 441.4 272 80.5
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 2.1e-121 439.5 306 76.8
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 3.5e-121 438.7 272 80.9
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 4.6e-121 438.3 270 80.4
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 7.9e-121 437.6 312 73.4
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 7.9e-121 437.6 303 74.6
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.8e-120 436.4 259 83.4
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 3.9e-120 435.3 278 78.1
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 6.7e-120 434.5 303 75.6
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 6.7e-120 434.5 302 74.2
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.9e-119 433.0 259 82.6
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 3.3e-119 432.2 303 73.9
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 7.4e-119 431.0 279 76.3
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.6e-118 429.9 278 76.6
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 6.2e-118 427.9 306 73.5
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 8.1e-118 427.6 270 78.1
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 1.4e-117 426.8 268 79.5
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 1.4e-117 426.8 272 76.8
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 1.8e-117 426.4 279 76.7
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 2.4e-117 426.0 246 83.7
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 4.0e-117 425.2 264 79.2
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 5.3e-117 424.9 320 70.0
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 2.0e-116 422.9 273 75.8
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 2.6e-116 422.5 303 71.3
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 1.9e-114 416.4 290 72.1
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 1.9e-114 416.4 268 74.3
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 4.2e-114 415.2 261 77.8
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 5.5e-114 414.8 285 73.7
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 1.2e-113 413.7 253 79.1
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.2e-113 413.7 273 75.1
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 2.7e-113 412.5 299 72.9
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 4.6e-113 411.8 259 78.4
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 4.6e-113 411.8 278 73.7
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 7.9e-113 411.0 305 69.5
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 7.9e-113 411.0 264 77.7
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 1.3e-112 410.2 259 78.0
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 1.8e-112 409.8 291 72.2
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 3.0e-112 409.1 280 72.9
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 3.0e-112 409.1 230 86.1
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 3.9e-112 408.7 301 70.1
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 3.9e-112 408.7 300 69.3
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 5.1e-112 408.3 265 75.8
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 5.1e-112 408.3 291 73.2
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 8.7e-112 407.5 265 75.5
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 1.1e-111 407.1 298 69.8
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 1.5e-111 406.8 302 69.9
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 1.5e-111 406.8 241 81.3
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.9e-111 406.4 263 76.4
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.9e-111 406.4 267 76.0
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 4.3e-111 405.2 269 75.5
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 5.7e-111 404.8 310 68.1
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 7.4e-111 404.4 296 70.3
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 7.4e-111 404.4 296 70.3
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 7.4e-111 404.4 296 70.3
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 7.4e-111 404.4 285 73.7
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 9.6e-111 404.1 250 79.2
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.3e-110 403.7 269 74.3
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 1.4e-109 400.2 271 74.9
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 1.2e-108 397.1 268 72.4
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 3.4e-108 395.6 300 68.3
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 7.6e-108 394.4 254 77.6
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.9e-107 392.5 230 81.3
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 2.9e-107 392.5 268 74.6
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 6.5e-107 391.3 254 76.8
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 9.3e-106 387.5 272 72.1
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 1.2e-105 387.1 249 77.9
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.3e-104 383.6 270 70.7
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 1.8e-104 383.3 278 69.4
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 1.1e-103 380.6 259 73.4
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 4.8e-102 375.2 230 78.7
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 4.8e-102 375.2 238 78.2
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 9.0e-101 370.9 264 71.6
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.2e-100 370.5 239 76.2
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 3.8e-99 365.5 312 64.1
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.9e-98 363.2 294 65.0
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 8.8e-96 354.4 242 73.1
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 2.0e-95 353.2 238 71.4
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 3.3e-95 352.4 234 74.8
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 5.7e-95 351.7 229 75.5
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 1.7e-94 350.1 246 72.4
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 1.5e-92 343.6 240 70.4
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 7.7e-92 341.3 224 74.1
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 2.7e-89 332.8 228 72.4
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.6e-81 307.0 239 69.9
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 6.1e-81 305.1 257 63.4
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 6.1e-81 305.1 209 74.6
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.3e-80 303.1 230 64.3
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 7.7e-76 288.1 198 72.7
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 1.7e-75 287.0 182 76.9
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 4.8e-70 268.9 221 63.8
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 3.6e-65 252.7 283 53.0
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 4.9e-62 242.3 170 71.2
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 4.3e-58 229.2 253 50.2
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 6.1e-57 225.3 173 67.1
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 1.2e-52 211.1 115 85.2
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 2.7e-52 209.9 115 84.3
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 5.8e-47 192.2 116 81.9
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 5.0e-43 179.1 118 73.7
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 1.6e-41 174.1 218 45.9
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 5.1e-35 152.5 221 43.0
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 5.8e-31 139.0 77 87.0
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 3.4e-23 113.2 233 36.5
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 6.6e-19 99.0 239 33.5
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 4.8e-17 92.8 63 74.6
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 4.3e-10 69.7 205 31.7
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 3.6e-09 66.6 43 72.1
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 3.4e-07 60.1 33 75.8
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 6.4e-06 55.8 188 30.3


User provided reference genes

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