Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 4.5e-17 90.9 47 100.0
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 4.2e-15 84.3 47 91.5
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 4.2e-15 84.3 47 91.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 4.2e-15 84.3 47 91.5
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 9.3e-15 83.2 47 89.4
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 9.3e-15 83.2 47 89.4
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.2e-14 82.8 47 89.4
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.2e-14 82.8 47 89.4
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 2.7e-14 81.6 47 87.2
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 3.5e-14 81.3 47 87.2
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 6.0e-14 80.5 47 87.2
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 6.0e-14 80.5 47 87.2
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 6.0e-14 80.5 47 87.2
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 6.0e-14 80.5 47 87.2
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 7.9e-14 80.1 47 85.1
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 7.9e-14 80.1 47 85.1
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.0e-13 79.7 48 89.6
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.3e-13 79.3 47 87.2
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 1.3e-13 79.3 48 89.6
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.8e-13 79.0 47 87.2
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.8e-13 79.0 47 87.2
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.8e-13 79.0 47 87.2
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.8e-13 79.0 47 87.2
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 3.0e-13 78.2 47 87.2
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 3.0e-13 78.2 47 87.2
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 3.0e-13 78.2 46 89.1
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 3.0e-13 78.2 46 89.1
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.9e-13 77.8 48 87.5
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.9e-13 77.8 48 87.5
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.9e-13 77.8 47 87.2
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 46 87.0
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 46 87.0
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 46 87.0
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 6.7e-13 77.0 47 83.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.7e-13 77.0 47 85.1
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 6.7e-13 77.0 46 89.1
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 8.7e-13 76.6 47 83.0
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 8.7e-13 76.6 47 83.0
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 1.5e-12 75.9 47 83.0
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 1.9e-12 75.5 46 84.8
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 1.9e-12 75.5 46 84.8
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.9e-12 75.5 46 84.8
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.9e-12 75.5 47 80.9
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 1.9e-12 75.5 55 76.4
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.9e-12 75.5 47 83.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.9e-12 75.5 47 83.0
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.9e-12 75.5 47 87.2
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.5e-12 75.1 47 83.0
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 2.5e-12 75.1 48 83.3
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.5e-12 75.1 47 83.0
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.5e-12 75.1 47 83.0
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.3e-12 74.7 46 87.0
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.3e-12 74.7 47 83.0
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 4.3e-12 74.3 48 83.3
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 4.3e-12 74.3 47 80.9
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 5.6e-12 73.9 48 85.4
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 5.6e-12 73.9 47 85.1
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 5.6e-12 73.9 47 78.7
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 7.4e-12 73.6 48 83.3
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 7.4e-12 73.6 48 83.3
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 7.4e-12 73.6 48 83.3
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.4e-12 73.6 47 78.7
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.4e-12 73.6 47 78.7
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 9.6e-12 73.2 47 78.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 9.6e-12 73.2 47 78.7
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.3e-11 72.8 47 80.9
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.3e-11 72.8 48 83.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.6e-11 72.4 48 85.4
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 1.6e-11 72.4 49 83.7
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 1.6e-11 72.4 47 76.6
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.6e-11 72.4 48 81.2
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.6e-11 72.4 48 81.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.6e-11 72.4 47 78.7
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.1e-11 72.0 47 85.1
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.1e-11 72.0 47 78.7
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 2.1e-11 72.0 47 85.1
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.1e-11 72.0 47 85.1
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-11 72.0 46 78.3
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-11 72.0 46 78.3
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-11 72.0 46 78.3
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-11 72.0 46 78.3
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 2.1e-11 72.0 47 76.6
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 2.1e-11 72.0 47 85.1
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.8e-11 71.6 47 80.9
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 3.7e-11 71.2 46 78.3
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 4.8e-11 70.9 46 76.1
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.8e-11 70.9 46 76.1
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 4.8e-11 70.9 48 79.2
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 6.2e-11 70.5 47 78.7
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 6.2e-11 70.5 47 78.7
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 6.2e-11 70.5 47 78.7
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 8.1e-11 70.1 47 76.6
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 8.1e-11 70.1 48 81.2
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.1e-10 69.7 47 72.3
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 1.4e-10 69.3 47 80.9
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 1.4e-10 69.3 48 77.1
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.8e-10 68.9 47 76.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.8e-10 68.9 48 77.1
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 2.4e-10 68.6 48 77.1
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 2.4e-10 68.6 47 78.7
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.1e-10 68.2 48 81.2
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 3.1e-10 68.2 48 79.2
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 3.1e-10 68.2 48 79.2
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 3.1e-10 68.2 48 79.2
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 3.1e-10 68.2 48 79.2
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.1e-10 68.2 48 77.1
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.0e-10 67.8 47 80.9
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 9.0e-10 66.6 47 72.3
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 9.0e-10 66.6 48 77.1
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.2e-09 66.2 46 78.3
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.2e-09 66.2 43 86.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.0e-09 65.5 47 72.3
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.6e-09 65.1 47 76.6
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.6e-09 65.1 46 69.6
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.4e-09 64.7 47 74.5
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 3.4e-09 64.7 48 77.1
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.4e-09 64.7 46 69.6
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 4.5e-09 64.3 47 78.7
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 4.5e-09 64.3 43 83.7
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 4.5e-09 64.3 40 85.0
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 5.8e-09 63.9 48 72.9
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 7.6e-09 63.5 49 71.4
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 7.6e-09 63.5 48 72.9
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.0e-08 63.2 46 71.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.3e-08 62.8 49 69.4
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.3e-08 62.8 48 70.8
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 1.7e-08 62.4 38 86.8
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.7e-08 62.4 48 66.7
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.2e-08 62.0 47 74.5
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 2.9e-08 61.6 47 74.5
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.9e-08 61.6 45 73.3
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 6.5e-08 60.5 49 73.5
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 6.5e-08 60.5 47 66.0
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 8.4e-08 60.1 49 69.4
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 1.4e-07 59.3 45 73.3
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.9e-07 58.9 46 69.6
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.2e-07 57.8 48 72.9
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 4.2e-07 57.8 48 72.9
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 4.2e-07 57.8 42 73.8
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 5.5e-07 57.4 35 82.9
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 7.1e-07 57.0 49 69.4
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 7.1e-07 57.0 49 69.4
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 7.1e-07 57.0 48 64.6
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 7.1e-07 57.0 45 66.7
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 9.3e-07 56.6 47 63.8
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 2.1e-06 55.5 39 79.5
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 6.0e-06 53.9 39 76.9
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 6.0e-06 53.9 39 76.9
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 6.0e-06 53.9 45 68.9
Lalb_Chr23g0273191 Lupinus albus HOM05D003549 ORTHO05D004223 7.9e-06 53.5 30 93.3


User provided reference genes

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