Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G102900 Manihot esculenta HOM05D007441 ORTHO05D009501 4.8e-109 397.9 208 100.0
Prupe.5G176500 Prunus persica HOM05D007441 ORTHO05D009501 2.1e-56 223.0 188 63.3
RcHm_v2.0_Chr7g0193911 Rosa chinensis HOM05D007441 ORTHO05D009501 1.0e-55 220.7 181 64.6
FvH4_5g05090 Fragaria vesca HOM05D007441 ORTHO05D009501 4.4e-54 215.3 182 62.6
Sabra12G0056200 Salix brachista HOM05D007441 ORTHO05D009501 9.8e-54 214.2 186 62.4
Potri.012G078400 Populus trichocarpa HOM05D007441 ORTHO05D009501 1.3e-53 213.8 181 64.1
FAN18G4363 Fragaria x ananassa HOM05D007441 ORTHO05D009501 2.2e-53 213.0 182 62.1
GSVIVG01007790001 Vitis vinifera HOM05D007441 ORTHO05D009501 4.9e-53 211.8 184 62.0
Glyma.17G091300 Glycine max HOM05D007441 ORTHO05D009501 1.1e-52 210.7 177 60.5
MD14G1183800 Malus domestica HOM05D007441 ORTHO05D009501 1.4e-52 210.3 188 61.2
Ciclev10022460m.g Citrus clementina HOM05D007441 ORTHO05D009501 4.1e-52 208.8 189 62.4
CSS0037538 Camellia sinensis var. sinensis HOM05D007441 ORTHO05D009501 5.4e-52 208.4 188 60.6
FAN04G2715 Fragaria x ananassa HOM05D007441 ORTHO05D009501 5.4e-52 208.4 182 60.4
TWI15G0162 Tripterygium wilfordii HOM05D007441 ORTHO05D009501 9.2e-52 207.6 188 58.5
FAN13G3077 Fragaria x ananassa HOM05D007441 ORTHO05D009501 1.6e-51 206.8 182 60.4
VMungo1215G1307 Vigna mungo HOM05D007441 ORTHO05D009501 6.0e-51 204.9 185 58.9
Atru.chr9.2436 Acer truncatum HOM05D007441 ORTHO05D009501 7.8e-51 204.5 189 60.8
QL10p013655 Quercus lobata HOM05D007441 ORTHO05D009501 3.0e-50 202.6 185 62.7
Hma1.2p1_0176F.1_g077710 Hydrangea macrophylla HOM05D007441 ORTHO05D009501 3.9e-50 202.2 192 59.4
Sc04g0001930 Simmondsia chinensis HOM05D007441 ORTHO05D009501 3.9e-50 202.2 141 70.2
Lj9A451T94 Lonicera japonica HOM05D007441 ORTHO05D009501 5.0e-50 201.8 197 56.3
Actinidia19093 Actinidia chinensis HOM05D007441 ORTHO05D009501 1.9e-49 199.9 181 61.3
Phvul.003G198700 Phaseolus vulgaris HOM05D007441 ORTHO05D009501 2.5e-49 199.5 185 57.8
Thecc.03G008500 Theobroma cacao HOM05D007441 ORTHO05D009501 2.5e-49 199.5 187 57.8
arahy.Tifrunner.gnm1.ann1.DR4P4T Arachis hypogaea HOM05D007441 ORTHO05D009501 4.3e-49 198.7 177 59.3
AUR62008240 Chenopodium quinoa HOM05D007441 ORTHO05D009501 7.3e-49 198.0 140 70.0
arahy.Tifrunner.gnm1.ann1.01HJP6 Arachis hypogaea HOM05D007441 ORTHO05D009501 9.5e-49 197.6 177 58.8
Potri.015G073900 Populus trichocarpa HOM05D007441 ORTHO05D009501 1.2e-48 197.2 181 61.9
Duzib084G0400 Durio zibethinus HOM05D007441 ORTHO05D009501 1.6e-48 196.8 186 59.1
Lj4g0018861 Lotus japonicus HOM05D007441 ORTHO05D009501 3.6e-48 195.7 177 58.8
CiPaw.11G029400 Carya illinoinensis HOM05D007441 ORTHO05D009501 6.2e-48 194.9 195 57.4
Lsat_1_v5_gn_1_26521 Lactuca sativa HOM05D007441 ORTHO05D009501 6.2e-48 194.9 169 60.4
PGR044G0794 Punica granatum HOM05D007441 ORTHO05D009501 6.2e-48 194.9 145 66.9
AUR62030992 Chenopodium quinoa HOM05D007441 ORTHO05D009501 8.0e-48 194.5 178 60.7
Cpa.g.sc124.33 Carica papaya HOM05D007441 ORTHO05D009501 1.1e-47 194.1 180 61.1
Lalb_Chr07g0182651 Lupinus albus HOM05D007441 ORTHO05D009501 3.1e-47 192.6 189 58.7
Hund02733 Selenicereus undatus HOM05D007441 ORTHO05D009501 4.0e-47 192.2 147 65.3
Dinv20676 Davidia involucrata HOM05D007441 ORTHO05D009501 1.2e-46 190.7 190 56.3
Duzib205G0170 Durio zibethinus HOM05D007441 ORTHO05D009501 1.2e-46 190.7 182 57.7
ECA247G2439 Erigeron canadensis HOM05D007441 ORTHO05D009501 4.9e-45 185.3 139 64.7
Ca_21923_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 3.2e-44 182.6 141 64.5
CANSAT80G2614 Cannabis sativa HOM05D007441 ORTHO05D009501 5.4e-44 181.8 184 54.3
Medtr4g106640 Medicago truncatula HOM05D007441 ORTHO05D009501 7.0e-44 181.4 177 55.4
SalBow5G3166 Salvia bowleyana HOM05D007441 ORTHO05D009501 7.0e-44 181.4 142 63.4
Ca_21905_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 1.2e-43 180.6 177 55.9
THA.LOC104809273 Tarenaya hassleriana HOM05D007441 ORTHO05D009501 1.2e-43 180.6 181 54.7
Psat4g057000 Pisum sativum HOM05D007441 ORTHO05D009501 2.1e-43 179.9 177 54.8
Sp1g23350 Schrenkiella parvula HOM05D007441 ORTHO05D009501 7.8e-43 177.9 182 52.2
SGA_v2.0_scaffold90G27976 Striga asiatica HOM05D007441 ORTHO05D009501 7.8e-43 177.9 174 55.2
TAR622G1175 Trochodendron aralioides HOM05D007441 ORTHO05D009501 2.3e-42 176.4 182 53.8
EL10Ac5g10787 Beta vulgaris HOM05D007441 ORTHO05D009501 3.9e-42 175.6 132 65.2
AL1G40490 Arabidopsis lyrata HOM05D007441 ORTHO05D009501 8.6e-42 174.5 182 52.2
AT1G24450 Arabidopsis thaliana HOM05D007441 ORTHO05D009501 8.6e-42 174.5 184 52.2
Solyc03g114120.3 Solanum lycopersicum HOM05D007441 ORTHO05D009501 1.9e-41 173.3 176 54.0
Sopen03g033180 Solanum pennellii HOM05D007441 ORTHO05D009501 1.9e-41 173.3 176 54.0
Rhsim12G0163200 Rhododendron simsii HOM05D007441 ORTHO05D009501 3.3e-41 172.6 185 53.0
AUR62029952 Chenopodium quinoa HOM05D007441 ORTHO05D009501 4.3e-41 172.2 126 66.7
HanXRQChr02g0037211 Helianthus annuus HOM05D007441 ORTHO05D009501 4.3e-41 172.2 143 59.4
C05p25830 Brassica napus HOM05D007441 ORTHO05D009501 5.6e-41 171.8 170 53.5
Nn4g22840 Nelumbo nucifera HOM05D007441 ORTHO05D009501 5.6e-41 171.8 139 59.7
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 5.6e-41 171.8 176 54.5
PGSC0003DMG400024487 Solanum tuberosum HOM05D007441 ORTHO05D009501 5.6e-41 171.8 176 53.4
Oeu016356.1 Olea europaea HOM05D007441 ORTHO05D009501 7.3e-41 171.4 149 57.7
PSO832G4588 Papaver somniferum HOM05D007441 ORTHO05D009501 7.3e-41 171.4 179 49.7
Aqoxy3G03040 Aquilegia oxysepala HOM05D007441 ORTHO05D009501 1.2e-40 170.6 140 59.3
A09p38770 Brassica napus HOM05D007441 ORTHO05D009501 1.6e-40 170.2 180 53.9
BraA09t39385Z Brassica rapa HOM05D007441 ORTHO05D009501 1.6e-40 170.2 180 53.9
Carub.0001s2566 Capsella rubella HOM05D007441 ORTHO05D009501 2.8e-40 169.5 184 52.7
BcaC05g26717 Brassica carinata HOM05D007441 ORTHO05D009501 8.1e-40 167.9 146 58.2
CARHR026680 Cardamine hirsuta HOM05D007441 ORTHO05D009501 8.1e-40 167.9 186 48.4
TPR.G37479 Trifolium pratense HOM05D007441 ORTHO05D009501 4.0e-39 165.6 143 57.3
Haze_07488 Corylus avellana HOM05D007441 ORTHO05D009501 5.2e-39 165.2 183 54.6
BolC5t31303H Brassica oleracea HOM05D007441 ORTHO05D009501 8.9e-39 164.5 170 51.8
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 8.9e-39 164.5 148 57.4
Thhalv10008862m.g Eutrema salsugineum HOM05D007441 ORTHO05D009501 2.0e-38 163.3 184 48.9
DCAR_031307 Daucus carota HOM05D007441 ORTHO05D009501 7.5e-38 161.4 122 64.8
MSTRG.23109 Avicennia marina HOM05D007441 ORTHO05D009501 1.7e-37 160.2 181 51.4
Aa31LG7G9580 Aethionema arabicum HOM05D007441 ORTHO05D009501 5.4e-36 155.2 185 48.6
BcaC05g26720 Brassica carinata HOM05D007441 ORTHO05D009501 2.1e-35 153.3 170 49.4
CAN.G4872.1 Capsicum annuum HOM05D007441 ORTHO05D009501 2.1e-35 153.3 161 55.3
CAN.G781.35 Capsicum annuum HOM05D007441 ORTHO05D009501 1.3e-34 150.6 149 51.0
MBI15_g31106_MAGBIO Magnolia biondii HOM05D007441 ORTHO05D009501 9.5e-33 144.4 111 64.0
Peaxi162Scf00017g00269 Petunia axillaris HOM05D007441 ORTHO05D009501 1.8e-31 140.2 113 63.7
BcaC05g26525 Brassica carinata HOM05D007441 ORTHO05D009501 4.0e-31 139.0 112 60.7
BcaC06g35265 Brassica carinata HOM05D007441 ORTHO05D009501 5.8e-30 135.2 110 61.8
C07p18070 Brassica napus HOM05D007441 ORTHO05D009501 2.9e-29 132.9 110 60.9
AUR62039786 Chenopodium quinoa HOM05D007441 ORTHO05D009501 2.4e-28 129.8 120 56.7
Dinv09163 Davidia involucrata HOM05D007441 ORTHO05D009501 3.9e-26 122.5 128 56.2
Zm00001eb210540 Zea mays HOM05D007441 ORTHO05D009501 3.9e-26 122.5 145 42.8
Actinidia34944 Actinidia chinensis HOM05D007441 ORTHO05D009501 1.5e-25 120.6 87 63.2
ATR1149G031 Amborella trichopoda HOM05D007441 ORTHO05D009501 1.9e-25 120.2 135 48.9
BolC7t42316H Brassica oleracea HOM05D007441 ORTHO05D009501 6.9e-23 111.7 95 58.9
AUR62040474 Chenopodium quinoa HOM05D007441 ORTHO05D009501 7.6e-22 108.2 126 50.0
COL.COLO4_16923 Corchorus olitorius HOM05D007441 ORTHO05D009501 3.8e-21 105.9 101 51.5
CAN.G781.34 Capsicum annuum HOM05D007441 ORTHO05D009501 1.1e-17 94.4 75 58.7
Medtr4g079220 Medicago truncatula HOM05D007441 ORTHO05D009501 9.6e-17 91.3 107 50.5
Migut.I00040 Erythranthe guttata HOM05D007441 ORTHO05D009501 4.0e-15 85.9 132 39.4
Os03g0854400 Oryza sativa ssp. japonica HOM05D007441 ORTHO05D009501 4.5e-14 82.4 148 35.1
SMO118G0028 Selaginella moellendorffii HOM05D007441 ORTHO05D009501 9.9e-14 81.3 124 37.9
SEGI_24388 Sequoiadendron giganteum HOM05D007441 ORTHO05D009501 1.2e-11 74.3 110 38.2
HPP92_004711 Vanilla planifolia HOM05D007441 ORTHO05D009501 2.5e-09 66.6 92 40.2


User provided reference genes

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