Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.6e-42 175.6 85 100.0
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 8.7e-33 143.3 85 83.5
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 4.3e-24 114.4 84 70.2
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.6e-23 112.5 83 72.3
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.1e-22 109.8 83 71.1
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.6e-21 105.1 83 66.3
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.8e-21 104.0 85 61.2
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.8e-21 104.0 85 61.2
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.8e-21 104.0 83 66.3
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 7.6e-21 103.6 86 61.6
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.0e-20 103.2 86 64.0
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.0e-20 103.2 83 67.5
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.7e-20 102.4 84 60.7
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 2.9e-20 101.7 86 64.0
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.9e-20 101.7 86 65.1
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.8e-20 101.3 89 61.8
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.8e-20 101.3 76 68.4
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 6.5e-20 100.5 80 63.8
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 8.4e-20 100.1 86 62.8
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.4e-20 100.1 86 62.8
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-19 99.4 86 64.0
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.4e-19 99.4 86 61.6
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.5e-19 98.6 86 64.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.5e-19 98.6 86 64.0
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.5e-19 98.6 86 61.6
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 2.5e-19 98.6 88 55.7
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 3.2e-19 98.2 83 61.4
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 4.2e-19 97.8 83 61.4
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 5.5e-19 97.4 84 63.1
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.1e-19 97.1 86 60.5
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.3e-19 96.7 86 62.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.2e-18 96.3 83 61.4
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.2e-18 96.3 75 64.0
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 2.7e-18 95.1 85 58.8
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.7e-18 95.1 81 58.0
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.5e-18 94.7 86 61.6
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.0e-18 94.0 86 64.0
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 7.9e-18 93.6 85 60.0
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.8e-17 92.4 80 61.2
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.8e-17 92.4 85 56.5
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.3e-17 92.0 88 62.5
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.3e-17 92.0 77 62.3
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.0e-17 91.7 85 56.5
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.9e-17 91.3 91 54.9
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 3.9e-17 91.3 83 55.4
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 3.9e-17 91.3 80 58.8
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 5.1e-17 90.9 75 60.0
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 5.1e-17 90.9 83 59.0
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.7e-17 90.5 84 61.9
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.1e-16 89.7 84 59.5
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.1e-16 89.7 84 59.5
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 61.2
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 56.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.9e-16 89.0 84 59.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.9e-16 89.0 85 56.5
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.3e-16 88.2 90 53.3
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.3e-16 88.2 85 56.5
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 4.3e-16 87.8 92 52.2
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 4.3e-16 87.8 86 57.0
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.7e-16 87.4 86 59.3
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.7e-16 87.4 75 56.0
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.7e-16 86.7 82 62.2
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 9.7e-16 86.7 84 57.1
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.2e-15 85.5 71 62.0
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 2.8e-15 85.1 85 55.3
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.8e-15 85.1 93 53.8
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.7e-15 84.7 83 53.0
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 3.7e-15 84.7 88 55.7
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.8e-15 84.3 89 50.6
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.8e-15 84.3 77 57.1
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 8.2e-15 83.6 77 58.4
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 8.2e-15 83.6 85 51.8
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 8.2e-15 83.6 74 59.5
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 8.2e-15 83.6 94 53.2
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.8e-14 82.4 82 57.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 2.4e-14 82.0 81 53.1
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 3.1e-14 81.6 88 54.5
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.1e-14 81.6 85 49.4
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 3.1e-14 81.6 81 54.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 5.3e-14 80.9 92 47.8
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 5.3e-14 80.9 87 55.2
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 6.9e-14 80.5 92 51.1
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 6.9e-14 80.5 84 54.8
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 9.0e-14 80.1 88 53.4
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 9.0e-14 80.1 84 51.2
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 9.0e-14 80.1 79 54.4
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.2e-13 79.7 76 59.2
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.2e-13 79.7 78 53.8
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 1.2e-13 79.7 79 51.9
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.2e-13 79.7 85 52.9
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.5e-13 79.3 80 52.5
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.0e-13 79.0 85 55.3
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 2.0e-13 79.0 90 51.1
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.6e-13 78.6 93 50.5
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 2.6e-13 78.6 86 53.5
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 3.4e-13 78.2 91 48.4
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 3.4e-13 78.2 92 48.9
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 3.4e-13 78.2 91 48.4
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 3.4e-13 78.2 94 47.9
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.4e-13 78.2 81 54.3
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 4.5e-13 77.8 82 53.7
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 7.7e-13 77.0 80 51.2
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 7.7e-13 77.0 83 51.8
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.3e-12 76.3 76 53.9
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.3e-12 76.3 80 51.2
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.7e-12 75.9 71 56.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.7e-12 75.9 85 47.1
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 2.2e-12 75.5 75 56.0
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 2.2e-12 75.5 81 55.6
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.2e-12 75.5 85 47.1
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.2e-12 75.5 85 47.1
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.9e-12 75.1 80 51.2
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 2.9e-12 75.1 86 53.5
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 3.8e-12 74.7 73 53.4
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 3.8e-12 74.7 73 53.4
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.8e-12 74.7 71 54.9
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 3.8e-12 74.7 85 50.6
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 5.0e-12 74.3 86 47.7
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 5.0e-12 74.3 76 55.3
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 5.0e-12 74.3 79 50.6
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 6.5e-12 73.9 92 44.6
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 6.5e-12 73.9 86 52.3
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 6.5e-12 73.9 79 53.2
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 8.5e-12 73.6 80 50.0
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 8.5e-12 73.6 85 49.4
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 8.5e-12 73.6 85 49.4
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 8.5e-12 73.6 85 51.8
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 84 51.2
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.4e-11 72.8 81 50.6
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.9e-11 72.4 84 53.6
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.9e-11 72.4 83 49.4
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 4.2e-11 71.2 53 62.3
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 5.5e-11 70.9 83 45.8
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 7.2e-11 70.5 78 47.4
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 1.2e-10 69.7 85 50.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.6e-10 69.3 76 48.7
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.6e-10 69.3 91 45.1
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.6e-10 69.3 91 45.1
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.6e-10 69.3 91 45.1
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.6e-10 69.3 91 45.1
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.6e-10 69.3 84 47.6
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 2.1e-10 68.9 70 48.6
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 2.1e-10 68.9 53 60.4
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.1e-10 68.9 86 45.3
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.1e-10 68.9 81 51.9
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.6e-10 68.2 61 65.6
Sabra12G0053900 Salix brachista HOM05D003533 ORTHO05D004009 4.6e-10 67.8 85 48.2
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 6.1e-10 67.4 77 45.5
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 6.1e-10 67.4 79 48.1
Rhsim08G0167800 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.1e-10 67.4 61 63.9
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 1.0e-09 66.6 84 42.9
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 1.0e-09 66.6 65 60.0
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 1.4e-09 66.2 73 49.3
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 2.3e-09 65.5 61 59.0
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.3e-09 65.5 82 47.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 3.0e-09 65.1 85 48.2
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.9e-09 64.7 79 49.4
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 8.8e-09 63.5 76 47.4
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 8.8e-09 63.5 84 42.9
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 8.8e-09 63.5 85 47.1
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.5e-08 62.8 85 45.9
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.5e-08 62.8 85 45.9
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.9e-08 62.4 76 46.1
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.5e-08 62.0 77 49.4
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.3e-08 61.6 87 46.0
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 7.4e-08 60.5 74 50.0
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 2.8e-07 58.5 78 41.0
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 4.8e-07 57.8 76 43.4
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 6.3e-07 57.4 81 43.2
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 8.2e-07 57.0 50 58.0
Sed0014302 Sechium edule HOM05D003533 ORTHO05D004009 8.2e-07 57.0 89 44.9
Gohir.D12G053600 Gossypium hirsutum HOM05D019532 ORTHO05D025681 1.1e-06 56.6 88 42.0
Lsat_1_v5_gn_1_11180 Lactuca sativa HOM05D003533 ORTHO05D004009 1.1e-06 56.6 76 51.3
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.4e-06 56.2 40 67.5
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 1.8e-06 55.8 63 47.6
EL10Ac5g10833 Beta vulgaris HOM05D003533 ORTHO05D004009 2.4e-06 55.5 71 46.5
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.1e-06 55.1 54 55.6
QL03p067192 Quercus lobata HOM05D003533 ORTHO05D337925 3.1e-06 55.1 84 40.5
RcHm_v2.0_Chr7g0179751 Rosa chinensis HOM05D003533 ORTHO05D004009 3.1e-06 55.1 83 49.4
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 3.1e-06 55.1 77 41.6
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 5.3e-06 54.3 70 44.3


User provided reference genes

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