Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 3.7e-160 568.2 285 100.0
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.0e-101 374.0 297 66.3
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 6.6e-101 371.3 284 70.1
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 5.6e-100 368.2 293 65.5
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 8.0e-99 364.4 261 70.1
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 3.1e-98 362.5 241 75.9
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.5e-97 360.1 283 67.8
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.0e-97 359.8 276 70.3
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.1e-95 352.1 240 74.2
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.0e-95 351.3 289 66.1
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 9.2e-95 350.9 237 72.2
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.2e-94 350.5 278 65.8
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.6e-94 350.1 284 64.8
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 2.1e-94 349.7 268 67.5
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.0e-94 348.2 277 66.8
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 6.0e-94 348.2 268 67.2
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.9e-93 345.5 243 75.3
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 5.0e-93 345.1 242 71.9
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 5.0e-93 345.1 244 73.4
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 6.6e-93 344.7 268 67.5
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.1e-92 344.0 240 72.5
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.1e-92 344.0 244 70.1
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 1.5e-92 343.6 278 66.5
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 1.9e-92 343.2 271 67.2
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 9.5e-92 340.9 272 67.3
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 2.1e-91 339.7 256 70.3
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 2.1e-91 339.7 286 64.0
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.1e-91 337.8 274 66.4
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.3e-90 336.3 274 66.4
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.8e-90 334.7 232 71.1
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.5e-89 333.6 259 66.0
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.6e-89 332.8 270 64.4
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-89 332.8 232 71.1
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 3.4e-89 332.4 270 64.4
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 4.4e-89 332.0 253 66.8
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 5.8e-89 331.6 242 69.4
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 7.5e-89 331.3 259 64.5
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.3e-88 330.5 240 70.4
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.7e-88 330.1 286 64.0
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.2e-88 329.7 264 66.3
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 2.2e-88 329.7 272 64.3
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 2.9e-88 329.3 270 64.1
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 2.9e-88 329.3 260 64.6
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.1e-87 327.4 276 61.6
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 1.1e-87 327.4 250 66.4
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.1e-87 327.4 261 65.9
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.1e-87 327.4 304 59.5
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 3.2e-87 325.9 254 65.0
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 3.2e-87 325.9 293 60.1
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 4.1e-87 325.5 272 62.5
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 5.4e-87 325.1 263 64.6
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 7.1e-87 324.7 285 61.4
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 7.1e-87 324.7 245 67.3
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 9.2e-87 324.3 242 69.8
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 9.2e-87 324.3 231 70.1
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 1.6e-86 323.6 269 61.0
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 2.1e-86 323.2 268 64.2
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 2.1e-86 323.2 241 69.3
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 2.7e-86 322.8 239 66.9
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 3.5e-86 322.4 254 67.3
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.0e-86 321.6 233 68.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.3e-85 320.5 244 68.9
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.3e-85 320.5 267 61.0
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.3e-85 319.7 235 67.7
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 3.0e-85 319.3 255 62.7
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 3.0e-85 319.3 265 61.5
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 3.9e-85 318.9 239 65.7
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 3.9e-85 318.9 250 66.0
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 3.9e-85 318.9 276 62.0
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 5.1e-85 318.5 241 68.9
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 5.1e-85 318.5 273 63.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 6.6e-85 318.2 255 62.4
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 6.6e-85 318.2 327 56.6
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 8.6e-85 317.8 240 67.5
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.5e-84 316.2 275 60.7
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 2.5e-84 316.2 238 66.8
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.3e-84 315.5 260 62.7
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 9.5e-84 314.3 247 66.0
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.6e-83 313.5 268 63.1
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.1e-83 313.2 276 60.1
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.8e-82 310.1 271 60.5
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 6.8e-82 308.1 259 63.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.2e-81 307.4 220 72.3
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 5.8e-81 305.1 286 58.4
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 4.9e-80 302.0 250 62.0
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 6.4e-80 301.6 272 59.9
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 3.2e-79 299.3 252 62.3
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.2e-78 297.4 238 63.9
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.0e-78 295.0 281 57.7
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.7e-77 293.5 268 60.4
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 3.0e-77 292.7 240 62.9
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.1e-77 292.0 230 63.9
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.7e-77 291.2 262 58.4
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 8.7e-77 291.2 276 57.2
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.5e-76 289.7 203 73.9
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.3e-76 288.9 243 60.5
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 9.6e-76 287.7 245 61.2
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.2e-75 287.3 215 68.4
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 2.8e-75 286.2 248 61.7
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.8e-75 286.2 251 58.6
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 8.1e-75 284.6 261 59.8
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.4e-74 283.9 232 62.9
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.8e-74 283.5 237 61.6
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 2.4e-74 283.1 245 60.0
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.2e-73 280.8 275 56.4
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.2e-73 280.8 277 56.7
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.5e-73 280.4 227 62.1
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.0e-73 280.0 238 63.0
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 3.4e-73 279.3 263 55.1
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.4e-73 278.9 232 62.5
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-72 276.2 271 55.0
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.1e-71 274.2 195 68.7
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 2.4e-71 273.1 299 51.8
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.6e-69 265.0 219 63.5
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.4e-66 257.3 207 64.7
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.8e-64 249.2 284 50.0
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 3.2e-63 246.1 163 75.5
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 3.2e-63 246.1 201 63.7
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.2e-63 246.1 245 54.3
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 2.1e-62 243.4 277 52.3
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 4.6e-62 242.3 227 54.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 6.0e-62 241.9 230 53.9
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.3e-61 240.7 279 53.8
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.9e-60 236.9 233 55.4
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.8e-59 233.0 307 45.9
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.8e-58 230.3 266 52.3
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 2.4e-58 229.9 233 49.8
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 4.0e-58 229.2 143 79.0
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.9e-58 228.4 147 76.2
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 2.9e-56 223.0 144 76.4
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 2.7e-54 216.5 151 70.2
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.3e-53 214.2 156 68.6
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.8e-51 206.5 235 50.6
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-44 184.1 168 56.0
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 7.4e-44 181.8 224 43.8
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.0e-42 174.9 155 58.7
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.7e-40 170.6 177 51.4
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.0e-40 169.1 174 49.4
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 8.5e-40 168.3 136 61.0
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 5.1e-37 159.1 96 81.2
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.1e-37 159.1 129 61.2
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 5.5e-31 139.0 211 39.8
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.7e-27 127.5 113 61.9
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.1e-26 124.8 93 65.6
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.1e-26 122.9 127 52.8
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 3.6e-22 109.8 239 34.3
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 8.0e-22 108.6 90 62.2
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.8e-21 107.5 245 33.5
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.8e-21 107.5 73 74.0
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.4e-13 81.3 73 56.2
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 8.5e-08 62.0 212 27.4
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 4.2e-07 59.7 178 28.1
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 9.4e-07 58.5 159 33.3


User provided reference genes

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