Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.8e-233 812.0 543 100.0
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 6.7e-179 631.3 548 79.0
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.8e-150 535.8 550 68.2
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 3.3e-149 532.7 544 71.0
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.1e-144 515.8 549 64.5
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 2.0e-143 513.5 544 65.1
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.9e-141 506.9 547 69.1
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 3.3e-141 506.1 538 65.4
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.2e-140 501.9 547 63.1
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.4e-139 500.7 544 66.2
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.5e-138 497.3 549 63.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 5.8e-138 495.4 546 72.0
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 9.8e-138 494.6 554 68.8
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 9.8e-138 494.6 544 64.2
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 6.4e-137 491.9 550 67.3
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 2.4e-136 490.0 549 69.0
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.0e-135 486.9 548 67.3
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.5e-135 486.1 548 67.3
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.3e-134 484.2 545 67.2
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.7e-134 483.8 550 63.3
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.0e-134 483.0 549 62.7
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.1e-133 481.1 549 61.0
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.1e-133 481.1 552 61.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 6.2e-132 475.3 547 67.8
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 8.1e-132 474.9 551 63.0
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.4e-131 474.2 549 66.5
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 6.8e-131 471.9 549 63.2
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.6e-130 469.9 558 63.6
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 9.8e-130 468.0 548 66.8
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.7e-129 467.2 571 58.5
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.9e-129 465.7 525 69.3
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 4.9e-129 465.7 591 59.7
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.4e-128 464.2 549 67.6
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 3.2e-128 463.0 552 66.3
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.7e-127 459.9 551 61.7
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.7e-127 459.9 549 62.1
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 3.5e-127 459.5 545 65.0
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.8e-127 458.4 545 64.6
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.0e-126 458.0 559 66.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.3e-126 457.6 570 64.9
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 5.1e-126 455.7 562 63.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.5e-125 454.1 562 60.3
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 4.3e-125 452.6 547 62.2
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.8e-124 449.9 548 65.5
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 3.6e-124 449.5 556 67.4
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 3.1e-123 446.4 562 65.5
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.6e-122 443.4 548 59.9
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 5.8e-122 442.2 558 62.0
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 2.2e-121 440.3 551 65.9
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.9e-121 439.9 558 59.5
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 3.7e-121 439.5 564 61.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.9e-121 439.1 552 63.0
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 2.4e-120 436.8 566 59.7
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.6e-119 434.1 557 61.2
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.0e-118 431.4 551 62.6
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.9e-118 429.5 551 62.8
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 5.1e-118 429.1 543 66.3
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.2e-116 424.5 563 56.3
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.6e-116 422.9 555 60.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 3.1e-115 419.9 555 60.9
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 5.2e-115 419.1 556 63.1
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 6.8e-115 418.7 547 60.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.2e-114 417.9 553 65.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 2.6e-114 416.8 555 62.9
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 9.9e-114 414.8 549 63.0
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 2.2e-113 413.7 553 62.0
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.9e-113 413.3 548 59.3
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 1.4e-112 411.0 551 63.5
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 7.8e-111 405.2 553 62.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.0e-110 404.8 555 63.4
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-110 404.4 554 60.5
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.7e-110 404.1 550 60.9
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 8.7e-110 401.7 565 57.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 8.7e-110 401.7 557 62.1
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 8.7e-110 401.7 555 56.2
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 7.3e-109 398.7 548 61.9
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.4e-107 394.4 553 61.8
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 4.0e-107 392.9 557 59.2
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 6.9e-107 392.1 549 54.6
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.2e-106 391.3 588 49.0
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.4e-105 385.6 551 58.1
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.4e-104 383.6 559 58.1
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 3.5e-103 379.8 561 56.5
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.8e-100 370.2 466 63.9
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-98 364.4 549 56.5
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.1e-96 358.2 553 59.3
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.7e-95 353.6 557 58.2
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.5e-93 347.8 551 60.1
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 3.3e-93 346.7 587 54.3
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 4.3e-93 346.3 561 52.8
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.1e-92 344.0 554 55.2
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.5e-90 337.8 549 58.7
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.6e-90 337.0 600 52.8
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.3e-89 334.7 490 57.8
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 2.5e-88 330.5 552 52.2
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 4.5e-82 309.7 555 51.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.3e-81 308.1 548 50.5
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.3e-81 308.1 557 48.1
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 5.5e-80 302.8 294 75.5
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.6e-79 301.2 556 48.7
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.1e-79 300.8 565 48.8
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.9e-77 294.3 400 59.0
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 3.3e-77 293.5 460 57.0
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 5.7e-77 292.7 591 47.5
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 9.7e-77 292.0 557 54.2
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.8e-76 290.4 556 47.5
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 4.8e-76 289.7 595 49.7
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 8.2e-76 288.9 562 53.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.3e-75 286.2 558 49.1
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 9.0e-75 285.4 557 52.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.9e-73 280.4 574 45.8
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 8.5e-73 278.9 579 50.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.6e-71 274.6 164 85.4
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.4e-70 271.6 554 49.3
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.4e-69 265.8 164 85.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.4e-67 261.5 507 49.9
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-67 260.8 497 54.3
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 4.1e-67 260.0 588 48.8
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 4.1e-67 260.0 381 48.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 2.6e-66 257.3 154 86.4
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.8e-60 237.3 154 79.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.4e-54 218.4 329 53.2
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.8e-54 218.0 165 73.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.5e-48 197.6 402 47.5
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 5.5e-48 196.4 541 39.6
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 2.4e-43 181.0 286 51.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 9.1e-43 179.1 457 43.8
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 4.2e-40 170.2 268 56.7
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.1e-35 155.6 501 44.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.9e-32 144.8 126 68.3
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.9e-28 131.0 72 87.5
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 3.7e-28 130.6 102 71.6
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.6e-26 123.6 81 72.8
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-24 118.2 106 62.3
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 3.3e-24 117.5 106 65.1
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 9.8e-21 105.9 142 54.2
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-20 105.1 101 64.4
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.1e-19 102.4 168 42.3
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.4e-19 102.1 64 84.4
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.4e-19 100.1 98 62.2
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 6.0e-18 96.7 103 60.2
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.7e-15 87.0 115 51.3
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 5.2e-14 83.6 58 82.8
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.2e-14 83.6 74 67.6
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.2e-14 83.6 74 67.6
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 9.8e-13 79.3 86 57.0
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.9e-12 77.8 46 87.0
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 7.3e-08 63.2 82 51.2
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 7.3e-08 63.2 82 51.2
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 7.3e-08 63.2 83 49.4
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.2e-07 62.4 75 54.7
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.6e-07 60.8 115 53.9
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 8.1e-07 59.7 156 30.8
SEGI_19875 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 6.8e-06 56.6 93 47.3


User provided reference genes

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