Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 1.0e-162 576.6 289 100.0
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 2.2e-112 409.5 318 67.9
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.7e-104 383.3 317 64.0
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.7e-104 383.3 317 64.0
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 3.8e-104 382.1 308 66.2
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 2.5e-103 379.4 310 65.2
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 7.1e-103 377.9 307 64.5
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 7.1e-103 377.9 306 66.3
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.2e-102 377.1 312 63.8
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 1.6e-102 376.7 308 64.3
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 2.7e-102 375.9 308 66.2
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 4.6e-102 375.2 311 65.0
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.0e-101 374.0 312 62.5
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 1.3e-101 373.6 311 65.0
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 8.7e-101 370.9 302 65.6
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 8.7e-101 370.9 308 64.3
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 1.5e-100 370.2 308 64.0
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 6.2e-99 364.8 311 60.5
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 8.2e-99 364.4 315 63.5
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 8.2e-99 364.4 302 65.2
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 8.2e-99 364.4 303 65.0
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 8.2e-99 364.4 305 65.2
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.1e-98 364.0 305 61.6
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.1e-98 364.0 321 61.7
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.0e-97 359.8 266 72.2
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 2.0e-97 359.8 306 62.4
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 2.0e-97 359.8 264 71.2
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 2.6e-97 359.4 305 63.9
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 3.4e-97 359.0 307 63.8
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 3.4e-97 359.0 282 70.2
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 3.4e-97 359.0 312 60.6
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.0e-96 357.5 304 61.8
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.3e-96 357.1 306 61.4
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 3.8e-96 355.5 312 60.3
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 9.3e-95 350.9 281 66.9
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.7e-94 349.4 299 61.9
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.6e-94 348.6 299 61.9
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 1.3e-93 347.1 287 65.5
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 1.3e-93 347.1 313 59.1
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 1.3e-93 347.1 311 59.2
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 3.0e-93 345.9 317 59.6
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 5.1e-93 345.1 321 56.4
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.9e-92 343.2 344 55.2
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 3.3e-92 342.4 312 61.2
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 4.3e-92 342.0 305 61.6
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 5.7e-92 341.7 308 58.8
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 7.4e-92 341.3 307 60.3
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.3e-91 340.5 296 61.8
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 2.8e-91 339.3 308 58.8
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 3.7e-91 339.0 311 58.2
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 3.7e-91 339.0 306 61.8
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 3.7e-91 339.0 306 60.1
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 1.4e-90 337.0 252 71.8
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 2.4e-90 336.3 311 57.6
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 5.3e-90 335.1 264 66.7
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 9.0e-90 334.3 311 58.2
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.2e-89 334.0 286 61.9
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.2e-89 334.0 308 58.1
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.2e-89 334.0 264 66.3
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.5e-89 333.6 304 58.9
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.5e-89 333.6 308 59.1
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 2.6e-89 332.8 309 57.9
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 2.6e-89 332.8 264 65.9
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 2.6e-89 332.8 319 54.5
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 3.4e-89 332.4 311 56.9
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 4.5e-89 332.0 310 57.7
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 4.5e-89 332.0 299 59.5
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 5.9e-89 331.6 311 57.2
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.0e-88 330.9 305 58.0
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 1.3e-88 330.5 270 64.1
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 1.7e-88 330.1 309 57.9
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 3.8e-88 328.9 313 55.6
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 1.4e-87 327.0 310 57.7
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 2.5e-87 326.2 283 59.0
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 2.7e-86 322.8 332 53.6
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 2.7e-86 322.8 305 56.4
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 4.6e-86 322.0 307 57.3
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 1.4e-85 320.5 303 58.4
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 1.4e-85 320.5 331 55.0
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.4e-85 320.5 312 57.1
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.8e-85 320.1 307 57.7
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 6.7e-85 318.2 254 64.6
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 8.2e-83 311.2 253 62.5
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 1.8e-82 310.1 264 62.5
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.8e-82 310.1 275 60.7
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 8.5e-80 301.2 372 51.3
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 2.5e-79 299.7 265 58.9
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 9.4e-79 297.7 290 56.6
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 9.4e-79 297.7 281 56.9
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 6.1e-78 295.0 308 52.3
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.3e-77 293.1 309 52.8
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 8.2e-75 284.6 311 51.4
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 1.8e-74 283.5 259 56.4
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 2.9e-72 276.2 328 51.5
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 5.0e-72 275.4 271 56.8
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 3.2e-71 272.7 257 57.6
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 4.7e-70 268.9 311 48.6
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 7.4e-68 261.5 264 56.8
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.8e-67 259.6 242 55.8
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 4.8e-67 258.8 397 42.6
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 4.5e-65 252.3 254 56.7
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.9e-63 246.9 181 71.3
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 9.4e-63 244.6 305 46.2
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.3e-59 231.9 150 77.3
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 6.3e-59 231.9 158 73.4
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 1.9e-55 220.3 190 62.1
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 4.0e-53 212.6 256 46.9
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 2.4e-50 203.4 257 45.1
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 1.6e-49 200.7 260 45.0
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 3.5e-49 199.5 176 62.5
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 8.6e-48 194.9 204 54.4
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 2.8e-46 189.9 287 39.4
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 4.4e-44 182.6 165 61.2
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.1e-42 177.9 163 60.1
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 2.1e-38 163.7 143 59.4
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 1.3e-35 154.5 141 60.3
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 3.0e-32 143.3 112 67.0
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.5e-31 141.0 136 60.3
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 5.6e-31 139.0 115 63.5
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.3e-27 125.2 108 61.1
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 2.7e-25 120.2 79 74.7
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 6.6e-24 115.5 86 68.6
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 1.1e-23 114.8 303 28.4
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.9e-23 114.0 85 63.5
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 5.6e-23 112.5 66 78.8
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-22 110.9 67 76.1
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.8e-21 107.5 71 74.6
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.7e-16 90.9 202 31.2
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.4e-13 81.3 247 29.6
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.1e-07 61.6 91 40.7


User provided reference genes

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