Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 1.2e-197 693.0 360 100.0
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 5.9e-139 498.0 362 74.6
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 2.9e-138 495.7 362 73.8
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.9e-137 493.0 360 73.6
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 5.2e-135 485.0 360 73.9
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.5e-134 483.4 360 71.1
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 4.4e-134 481.9 360 71.1
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 5.7e-134 481.5 366 71.9
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 3.1e-132 475.7 359 71.9
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 7.0e-132 474.6 363 71.1
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 2.0e-131 473.0 363 71.3
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 2.5e-129 466.1 357 70.0
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 6.1e-128 461.5 362 70.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 8.0e-128 461.1 359 69.9
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 2.3e-127 459.5 357 70.3
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.0e-126 456.4 359 68.5
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 3.4e-126 455.7 357 68.6
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 7.5e-126 454.5 362 69.6
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 9.8e-126 454.1 357 66.9
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 2.8e-125 452.6 396 65.2
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.4e-124 450.3 361 68.7
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.8e-124 449.9 359 67.1
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 7.0e-124 448.0 358 67.6
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 9.1e-124 447.6 360 66.7
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.2e-123 447.2 362 68.2
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 1.2e-123 447.2 390 63.3
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.6e-123 446.8 363 67.5
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 1.6e-123 446.8 426 60.6
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 2.0e-123 446.4 362 68.5
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 4.5e-123 445.3 364 68.1
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 7.7e-123 444.5 355 67.9
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 7.7e-123 444.5 353 69.7
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 2.2e-122 443.0 364 68.4
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 3.2e-121 439.1 359 66.0
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 6.1e-120 434.9 350 68.9
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.4e-119 433.7 363 68.0
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.4e-119 433.7 359 65.5
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 8.8e-119 431.0 348 68.1
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 4.4e-118 428.7 362 66.3
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 5.7e-118 428.3 361 65.1
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 9.8e-118 427.6 357 64.4
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 2.8e-117 426.0 363 65.0
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 6.3e-117 424.9 354 65.8
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 3.1e-116 422.5 368 65.8
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 2.0e-115 419.9 358 65.1
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.7e-115 419.5 361 64.3
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 4.5e-115 418.7 348 67.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 4.5e-115 418.7 359 66.3
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 5.9e-115 418.3 358 65.1
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.0e-114 417.5 359 64.3
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 3.3e-113 412.5 361 63.4
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 8.0e-112 407.9 351 63.0
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.3e-111 406.4 357 64.1
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 5.2e-111 405.2 333 66.7
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 6.8e-111 404.8 359 61.6
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 1.2e-110 404.1 352 63.4
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.5e-110 403.7 360 61.7
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 3.4e-110 402.5 365 60.5
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 4.4e-110 402.1 360 61.4
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 5.7e-110 401.7 360 61.7
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 5.7e-110 401.7 357 62.7
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 7.5e-110 401.4 355 62.0
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.1e-108 397.5 362 60.2
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.1e-108 397.5 354 62.4
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.1e-108 397.5 361 60.9
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.4e-108 397.1 364 60.7
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 2.4e-108 396.4 363 61.4
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 3.2e-108 396.0 371 62.0
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 7.0e-108 394.8 319 68.7
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 7.0e-108 394.8 357 60.2
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 1.2e-107 394.0 361 60.1
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.2e-107 394.0 360 61.9
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 1.2e-107 394.0 358 60.6
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 4.6e-107 392.1 357 59.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 7.8e-107 391.3 352 61.4
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 2.3e-106 389.8 351 62.1
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.1e-105 387.5 361 60.4
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.1e-105 387.5 361 60.4
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 1.1e-105 387.5 355 60.3
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.5e-105 386.3 353 60.9
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 4.3e-105 385.6 361 59.3
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 4.3e-105 385.6 361 59.3
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 4.3e-105 385.6 357 60.2
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 5.6e-105 385.2 358 60.9
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 1.6e-104 383.6 374 58.8
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 1.6e-104 383.6 374 58.6
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 2.8e-104 382.9 353 60.3
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 4.7e-104 382.1 355 61.4
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.0e-103 380.9 352 62.2
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 8.9e-103 377.9 357 60.8
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 4.4e-102 375.6 353 59.5
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.7e-101 373.6 353 59.2
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.1e-100 370.9 357 57.4
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.4e-100 370.5 357 58.5
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 1.2e-99 367.5 355 57.5
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.0e-98 364.4 348 58.6
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.1e-97 360.9 351 59.3
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 8.9e-95 351.3 359 58.5
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 3.2e-92 342.8 350 55.1
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.2e-88 330.9 357 53.5
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 2.4e-84 316.6 358 51.4
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 7.1e-76 288.5 353 49.6
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 5.8e-70 268.9 272 55.9
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 4.2e-68 262.7 157 85.4
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.8e-64 250.0 362 45.0
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.8e-64 250.0 362 45.0
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 6.2e-64 248.8 221 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.8e-58 230.7 352 43.2
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 3.0e-58 229.9 354 42.1
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 1.1e-39 168.3 120 75.8
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 4.6e-35 152.9 122 63.9
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 8.8e-34 148.7 250 38.8
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 8.8e-34 148.7 147 53.1
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 7.4e-25 119.0 385 31.4
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 7.7e-22 109.0 89 65.2
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 1.5e-17 94.7 146 41.1
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 2.8e-16 90.5 153 39.2
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 1.4e-10 71.6 78 50.0
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 1.2e-09 68.6 443 24.6
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.3e-08 65.1 90 50.0
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.7e-06 57.4 90 45.6


User provided reference genes

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