Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 2.2e-45 185.3 95 100.0
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 2.2e-37 158.7 96 86.5
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.7e-27 124.4 95 64.2
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 4.0e-26 121.3 95 62.1
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.0e-25 119.0 97 67.0
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 2.2e-24 115.5 89 64.0
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 2.2e-24 115.5 95 60.0
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.8e-24 115.2 95 58.9
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 2.8e-24 115.2 94 60.6
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 3.7e-24 114.8 95 64.2
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.1e-23 113.2 93 62.4
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.4e-23 112.8 95 61.1
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.5e-22 108.2 95 57.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 3.5e-22 108.2 95 58.9
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.5e-22 107.8 95 57.9
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 4.5e-22 107.8 96 61.5
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 5.9e-22 107.5 96 60.4
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.2e-21 105.5 89 57.3
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.5e-20 102.8 89 57.3
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-20 102.8 97 57.7
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.5e-20 102.8 94 57.4
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.2e-20 101.3 97 56.7
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.2e-20 100.5 97 55.7
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 9.4e-20 100.1 95 56.8
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 9.4e-20 100.1 96 58.3
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.7e-19 98.6 96 55.2
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.8e-18 95.9 96 51.0
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 5.2e-18 94.4 87 58.6
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 6.8e-18 94.0 96 49.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 4.4e-17 91.3 98 53.1
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.3e-16 89.7 96 47.9
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 1.7e-16 89.4 98 56.1
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 1.7e-16 89.4 96 49.0
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 6.3e-16 87.4 93 51.6
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 8.3e-16 87.0 77 58.4
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 8.3e-16 87.0 97 47.4
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.8e-15 85.9 89 50.6
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.4e-15 85.5 89 50.6
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.1e-15 85.1 87 55.2
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 1.6e-14 82.8 104 44.2
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 5.9e-14 80.9 88 55.7
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.7e-14 80.5 96 52.1
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.7e-13 79.3 87 44.8
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 2.9e-13 78.6 87 47.1
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.8e-13 78.2 96 46.9
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 8.6e-13 77.0 84 52.4
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.1e-12 76.6 94 48.9
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 3.2e-12 75.1 96 49.0
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 7.2e-12 73.9 94 46.8
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 7.2e-12 73.9 88 51.1
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 7.2e-12 73.9 87 47.1
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 1.6e-11 72.8 85 45.9
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 1.6e-11 72.8 96 44.8
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 2.8e-11 72.0 89 46.1
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 6.1e-11 70.9 97 46.4
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.4e-10 69.7 96 45.8
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.8e-10 69.3 88 45.5
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.8e-10 69.3 88 45.5
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.8e-10 69.3 94 44.7
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 1.8e-10 69.3 98 43.9
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.8e-10 69.3 90 43.3
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.3e-10 68.9 95 45.3
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 4.0e-10 68.2 79 49.4
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 5.2e-10 67.8 90 41.1
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 6.8e-10 67.4 93 43.0
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 8.8e-10 67.0 91 47.3
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.2e-09 66.6 96 42.7
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.5e-09 66.2 97 44.3
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 3.4e-09 65.1 89 44.9
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.4e-09 64.7 96 40.6
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 5.7e-09 64.3 86 41.9
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.7e-09 64.3 87 44.8
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.7e-09 64.3 87 44.8
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 1.3e-08 63.2 87 43.7
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.7e-08 62.8 91 42.9
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.2e-08 62.4 87 43.7
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.8e-08 62.0 99 43.4
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 3.7e-08 61.6 96 40.6
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 4.9e-08 61.2 90 42.2
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 4.9e-08 61.2 94 41.5
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 6.3e-08 60.8 100 41.0
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 8.3e-08 60.5 89 38.2
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 8.3e-08 60.5 88 39.8
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.8e-07 59.3 100 42.0
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.1e-07 58.5 89 37.1
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.1e-07 58.2 89 37.1
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 9.2e-07 57.0 95 37.9
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.2e-06 56.6 91 37.4
BcaC07g38953 Brassica carinata HOM05D011140 ORTHO05D013248 2.0e-06 55.8 97 43.3
C08p18990 Brassica napus HOM05D011140 ORTHO05D013248 2.0e-06 55.8 97 43.3
BolC8t49523H Brassica oleracea HOM05D011140 ORTHO05D013248 2.0e-06 55.8 97 43.3
A08p30150 Brassica napus HOM05D011140 ORTHO05D013248 3.5e-06 55.1 99 40.4
BraA08t34949Z Brassica rapa HOM05D011140 ORTHO05D013248 3.5e-06 55.1 99 40.4
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.5e-06 55.1 87 39.1
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.5e-06 55.1 87 37.9
BcaC05g25785 Brassica carinata HOM05D011140 ORTHO05D013248 4.5e-06 54.7 109 37.6
C05p17250 Brassica napus HOM05D011140 ORTHO05D013248 4.5e-06 54.7 109 37.6
BolC5t30425H Brassica oleracea HOM05D011140 ORTHO05D013248 4.5e-06 54.7 109 37.6
BraA06t24620Z Brassica rapa HOM05D011140 ORTHO05D013248 4.5e-06 54.7 109 37.6
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 4.5e-06 54.7 94 40.4
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.5e-06 54.7 87 37.9
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 4.5e-06 54.7 97 37.1
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 5.9e-06 54.3 93 38.7
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.9e-06 54.3 87 37.9
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 5.9e-06 54.3 93 37.6
A06p15050 Brassica napus HOM05D011140 ORTHO05D013248 7.8e-06 53.9 109 37.6
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.8e-06 53.9 87 36.8
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 7.8e-06 53.9 98 36.7


User provided reference genes

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