Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 4.8e-51 204.1 98 100.0
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 3.1e-26 121.7 98 69.4
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 6.5e-24 114.0 94 66.0
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 2.7e-22 108.6 92 62.0
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 1.0e-21 106.7 95 58.9
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 2.8e-19 98.6 99 55.6
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 1.4e-18 96.3 98 55.1
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 5.3e-18 94.4 95 56.8
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 7.0e-18 94.0 95 58.9
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 7.0e-18 94.0 98 56.1
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 7.0e-18 94.0 99 53.5
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 7.0e-18 94.0 99 53.5
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 1.2e-17 93.2 95 54.7
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.6e-17 92.8 95 54.7
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.6e-17 92.8 93 54.8
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.6e-17 92.8 93 54.8
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 2.6e-17 92.0 100 53.0
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.0e-16 90.1 84 58.3
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.0e-16 90.1 84 58.3
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 1.3e-16 89.7 98 53.1
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.3e-16 89.7 93 53.8
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.2e-16 89.0 84 57.1
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 2.2e-16 89.0 97 52.6
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 6.5e-16 87.4 85 57.6
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 6.5e-16 87.4 85 57.6
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.5e-15 86.3 84 53.6
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.5e-15 86.3 101 52.5
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 1.5e-15 86.3 90 54.4
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 3.2e-15 85.1 99 53.5
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 4.2e-15 84.7 101 51.5
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 5.5e-15 84.3 94 53.2
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 5.5e-15 84.3 84 56.0
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 7.2e-15 84.0 80 58.8
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 9.4e-15 83.6 93 55.9
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.2e-14 83.2 93 55.9
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 3.6e-14 81.6 84 54.8
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 2.3e-13 79.0 92 51.1
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 6.8e-13 77.4 100 52.0
TAR371G0193 Trochodendron aralioides HOM05D007106 ORTHO05D007770 2.6e-12 75.5 90 52.2
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 3.4e-12 75.1 89 49.4
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 5.7e-12 74.3 87 48.3
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 7.5e-12 73.9 92 48.9
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 7.5e-12 73.9 79 51.9
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 9.8e-12 73.6 89 47.2
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 1.3e-11 73.2 86 48.8
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 1.3e-11 73.2 91 47.3
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 2.2e-11 72.4 98 49.0
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.8e-11 72.0 91 53.8
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 2.8e-11 72.0 100 48.0
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 3.7e-11 71.6 92 51.1
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 4.8e-11 71.2 99 44.4
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 4.8e-11 71.2 90 48.9
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 1.1e-10 70.1 92 43.5
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.4e-10 69.7 91 50.5
Haze_12000 Corylus avellana HOM05D007106 ORTHO05D007770 1.4e-10 69.7 89 49.4
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 1.8e-10 69.3 79 50.6
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 1.8e-10 69.3 87 48.3
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 2.4e-10 68.9 75 50.7
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 2.4e-10 68.9 98 43.9
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 2.4e-10 68.9 94 46.8
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 3.1e-10 68.6 92 50.0
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 4.1e-10 68.2 84 51.2
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 4.1e-10 68.2 92 46.7
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 4.1e-10 68.2 95 45.3
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 7.0e-10 67.4 99 48.5
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 7.0e-10 67.4 94 44.7
QL03p068707 Quercus lobata HOM05D007106 ORTHO05D007770 7.0e-10 67.4 89 42.7
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 9.1e-10 67.0 102 44.1
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 1.2e-09 66.6 84 47.6
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.2e-09 66.6 80 48.8
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.6e-09 66.2 88 52.3
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 3.5e-09 65.1 86 43.0
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.5e-09 64.7 84 48.8
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 7.7e-09 63.9 108 39.8
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.0e-08 63.5 89 46.1
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.3e-08 63.2 87 46.0
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 2.9e-08 62.0 95 41.1
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 2.9e-08 62.0 84 42.9
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 6.5e-08 60.8 90 47.8
Haze_07318 Corylus avellana HOM05D007106 ORTHO05D007770 1.1e-07 60.1 51 60.8
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 1.9e-07 59.3 81 44.4
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 1.9e-07 59.3 87 40.2
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 2.5e-07 58.9 84 46.4
MBI19_g09311_MAGBIO Magnolia biondii HOM05D007691 ORTHO05D008758 3.2e-07 58.5 88 44.3
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 4.2e-07 58.2 93 43.0
Nn6g32394 Nelumbo nucifera HOM05D007691 ORTHO05D008758 5.5e-07 57.8 89 37.1
MBI19_g38148_MAGBIO Magnolia biondii HOM05D007691 ORTHO05D008758 9.4e-07 57.0 88 43.2
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 1.6e-06 56.2 103 41.7
HanXRQChr05g0155941 Helianthus annuus HOM05D007106 ORTHO05D007770 1.6e-06 56.2 89 41.6
Solyc07g150120.1 Solanum lycopersicum HOM05D007106 ORTHO05D007770 2.7e-06 55.5 90 45.6
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 2.7e-06 55.5 85 44.7
TAR633G0734 Trochodendron aralioides HOM05D007691 ORTHO05D008758 3.6e-06 55.1 85 36.5
Duzib128G0235 Durio zibethinus HOM05D007691 ORTHO05D008758 4.7e-06 54.7 87 39.1
Sopen06g004820 Solanum pennellii HOM05D007106 ORTHO05D007770 4.7e-06 54.7 89 43.8
Sopen12g025630 Solanum pennellii HOM05D007106 ORTHO05D007770 4.7e-06 54.7 90 44.4
arahy.Tifrunner.gnm1.ann1.Y9A4XN Arachis hypogaea HOM05D007106 ORTHO05D007770 6.1e-06 54.3 99 42.4
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 6.1e-06 54.3 32 75.0
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 8.0e-06 53.9 101 44.6


User provided reference genes

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