Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 6.6e-66 253.8 123 100.0
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 5.1e-42 174.5 96 89.6
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 9.3e-28 127.1 111 59.5
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.1e-25 120.2 112 57.1
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.1e-25 120.2 112 57.1
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 3.3e-25 118.6 96 63.5
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 5.7e-25 117.9 113 54.9
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 9.7e-25 117.1 96 61.5
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.6e-24 116.3 111 54.1
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 1.1e-23 113.6 96 63.5
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 1.1e-23 113.6 111 54.1
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 9.0e-23 110.5 96 63.5
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 9.0e-23 110.5 112 51.8
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 5.9e-22 107.8 91 59.3
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 5.9e-22 107.8 96 61.5
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.0e-21 107.1 115 52.2
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 1.3e-21 106.7 96 59.4
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 2.9e-21 105.5 115 52.2
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.9e-21 105.5 115 52.2
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 3.8e-21 105.1 113 50.4
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 3.8e-21 105.1 112 50.0
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 3.8e-21 105.1 115 51.3
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 6.5e-21 104.4 98 60.2
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 1.9e-20 102.8 112 50.0
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 3.2e-20 102.1 111 50.5
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 5.5e-20 101.3 119 52.9
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 1.2e-19 100.1 115 50.4
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 2.7e-19 99.0 115 51.3
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 3.6e-19 98.6 98 59.2
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 7.9e-19 97.4 111 48.6
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 7.9e-19 97.4 117 49.6
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.8e-18 96.3 113 46.0
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 1.8e-18 96.3 111 47.7
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 2.3e-18 95.9 84 64.3
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 8.8e-18 94.0 113 49.6
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 4.8e-16 88.2 115 43.5
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 8.2e-16 87.4 112 50.0
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 8.2e-16 87.4 111 50.5
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 1.8e-15 86.3 113 46.9
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 4.1e-15 85.1 111 50.5
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 5.3e-15 84.7 113 48.7
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 9.1e-15 84.0 113 45.1
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 3.4e-14 82.0 114 46.5
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 3.4e-14 82.0 111 43.2
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 3.4e-14 82.0 113 46.0
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 4.5e-14 81.6 115 43.5
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 4.5e-14 81.6 112 45.5
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 4.5e-14 81.6 101 45.5
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 7.7e-14 80.9 113 49.6
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 1.0e-13 80.5 113 42.5
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 1.3e-13 80.1 113 43.4
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 1.3e-13 80.1 112 42.0
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 6.5e-13 77.8 117 44.4
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 8.5e-13 77.4 112 42.9
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.9e-12 76.3 112 41.1
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 3.2e-12 75.5 112 41.1
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 4.2e-12 75.1 112 44.6
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 4.2e-12 75.1 112 44.6
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 7.2e-12 74.3 112 45.5
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 9.4e-12 73.9 116 42.2
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 2.1e-11 72.8 113 42.5
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 2.1e-11 72.8 111 45.0
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 2.1e-11 72.8 112 43.8
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 3.6e-11 72.0 113 42.5
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 4.7e-11 71.6 94 44.7
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 7.9e-11 70.9 118 44.1
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 7.9e-11 70.9 107 40.2
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 1.4e-10 70.1 111 39.6
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 1.8e-10 69.7 114 42.1
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 3.0e-10 68.9 98 41.8
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 3.9e-10 68.6 59 55.9
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 1.5e-09 66.6 116 37.9
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 2.6e-09 65.9 79 50.6
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 5.7e-09 64.7 63 47.6
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 7.4e-09 64.3 111 41.4
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 1.3e-08 63.5 107 38.3
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 1.7e-08 63.2 108 38.9
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 2.8e-08 62.4 117 40.2
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 3.7e-08 62.0 117 40.2
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 8.2e-08 60.8 112 32.1
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.2e-06 57.0 69 46.4
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 2.0e-06 56.2 58 50.0
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 2.0e-06 56.2 79 43.0


User provided reference genes

Program Settings