Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G088001 Manihot esculenta HOM05D000262 ORTHO05D249809 3.1e-17 90.9 52 100.0
Manes.12G139000 Manihot esculenta HOM05D000262 ORTHO05D000300 5.7e-11 70.1 44 95.5
MD15G1328000 Malus domestica HOM05D000262 ORTHO05D000300 9.1e-09 62.8 44 70.5
Prupe.6G179300 Prunus persica HOM05D000262 ORTHO05D000300 9.1e-09 62.8 44 70.5
TWI74G0169 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 9.1e-09 62.8 44 86.4
FAN26G0693 Fragaria x ananassa HOM05D000262 ORTHO05D000300 1.2e-08 62.4 44 72.7
FAN28G1131 Fragaria x ananassa HOM05D000262 ORTHO05D000300 1.6e-08 62.0 44 72.7
Gohir.A02G132800 Gossypium hirsutum HOM05D000262 ORTHO05D000300 2.7e-08 61.2 44 70.5
Gohir.D03G044200 Gossypium hirsutum HOM05D000262 ORTHO05D000300 2.7e-08 61.2 44 70.5
Gorai.003G045300 Gossypium raimondii HOM05D000262 ORTHO05D000300 2.7e-08 61.2 44 70.5
Medtr8g091420 Medicago truncatula HOM05D000262 ORTHO05D000300 2.7e-08 61.2 44 77.3
RcHm_v2.0_Chr2g0115511 Rosa chinensis HOM05D000262 ORTHO05D000300 2.7e-08 61.2 44 70.5
TPR.G2225 Trifolium pratense HOM05D000262 ORTHO05D000300 2.7e-08 61.2 44 84.1
FvH4_1g21640 Fragaria vesca HOM05D000262 ORTHO05D000300 3.5e-08 60.8 44 70.5
FAN19G2706 Fragaria x ananassa HOM05D000262 ORTHO05D000300 3.5e-08 60.8 44 70.5
FAN23G0489 Fragaria x ananassa HOM05D000262 ORTHO05D000300 3.5e-08 60.8 44 70.5
MD01G1024200 Malus domestica HOM05D000262 ORTHO05D000300 4.5e-08 60.5 44 68.2
Psat5g088320 Pisum sativum HOM05D000262 ORTHO05D000300 4.5e-08 60.5 44 65.9
Duzib147G0541 Durio zibethinus HOM05D000262 ORTHO05D000300 5.9e-08 60.1 44 68.2
COL.COLO4_11052 Corchorus olitorius HOM05D000262 ORTHO05D000300 7.7e-08 59.7 44 68.2
COL.COLO4_11053 Corchorus olitorius HOM05D000262 ORTHO05D000300 7.7e-08 59.7 44 68.2
Medtr3g087770 Medicago truncatula HOM05D000262 ORTHO05D000300 7.7e-08 59.7 44 81.8
TWI53G0935 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 7.7e-08 59.7 44 68.2
Potri.005G079800 Populus trichocarpa HOM05D000262 ORTHO05D000300 1.0e-07 59.3 44 68.2
Sabra05G0065500 Salix brachista HOM05D000262 ORTHO05D000300 1.0e-07 59.3 44 68.2
Thecc.01G107400 Theobroma cacao HOM05D000262 ORTHO05D000300 1.0e-07 59.3 44 68.2
Ca_17711_v3 Cicer arietinum L. HOM05D000262 ORTHO05D000300 1.3e-07 58.9 44 65.9
Ciclev10026695m.g Citrus clementina HOM05D000262 ORTHO05D000300 1.3e-07 58.9 44 77.3
Glyma.05G181500 Glycine max HOM05D000262 ORTHO05D000300 1.3e-07 58.9 44 84.1
Glyma.08G139200 Glycine max HOM05D000262 ORTHO05D000300 1.3e-07 58.9 44 84.1
Aqoxy6G00547 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 1.7e-07 58.5 44 56.8
Duzib264G0478 Durio zibethinus HOM05D000262 ORTHO05D000300 1.7e-07 58.5 44 65.9
TWI77G0298 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 1.7e-07 58.5 44 81.8
CSS0026701 Camellia sinensis var. sinensis HOM05D000262 ORTHO05D000300 2.2e-07 58.2 44 70.5
THA.LOC104824863 Tarenaya hassleriana HOM05D000262 ORTHO05D000300 2.2e-07 58.2 43 62.8
Potri.007G087300 Populus trichocarpa HOM05D000262 ORTHO05D000300 2.9e-07 57.8 44 65.9
Sabra07G0072200 Salix brachista HOM05D000262 ORTHO05D000300 2.9e-07 57.8 44 65.9
Phvul.002G262500 Phaseolus vulgaris HOM05D000262 ORTHO05D000300 3.8e-07 57.4 44 65.9
VMungo0251G2743 Vigna mungo HOM05D000262 ORTHO05D000300 3.8e-07 57.4 44 65.9
QL06p050470 Quercus lobata HOM05D000262 ORTHO05D000300 5.0e-07 57.0 44 70.5
Sc03g0002300 Simmondsia chinensis HOM05D000262 ORTHO05D000300 5.0e-07 57.0 44 63.6
Hund13644 Selenicereus undatus HOM05D000262 ORTHO05D000300 6.5e-07 56.6 44 68.2
Hund31027 Selenicereus undatus HOM05D000262 ORTHO05D000300 6.5e-07 56.6 44 68.2
CiPaw.03G138400 Carya illinoinensis HOM05D000262 ORTHO05D000300 8.5e-07 56.2 44 70.5
ClCG01G019000 Citrullus lanatus HOM05D000262 ORTHO05D000300 8.5e-07 56.2 44 70.5
Lalb_Chr11g0075231 Lupinus albus HOM05D000262 ORTHO05D000300 8.5e-07 56.2 44 72.7
MBI05_g00775_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 8.5e-07 56.2 44 68.2
Psat7g053160 Pisum sativum HOM05D000262 ORTHO05D000300 8.5e-07 56.2 44 63.6
CANSAT01G2996 Cannabis sativa HOM05D000262 ORTHO05D000300 1.1e-06 55.8 44 68.2
Ca_16546_v3 Cicer arietinum L. HOM05D000262 ORTHO05D000300 1.1e-06 55.8 45 64.4
Rhsim10G0156500 Rhododendron simsii HOM05D000262 ORTHO05D000300 1.1e-06 55.8 44 68.2
Cfa002718 Carpinus fangiana HOM05D000262 ORTHO05D000300 1.5e-06 55.5 44 70.5
Cc07_g15640 Coffea canephora HOM05D000262 ORTHO05D000300 1.5e-06 55.5 44 68.2
Dinv16318 Davidia involucrata HOM05D000262 ORTHO05D000300 1.5e-06 55.5 44 65.9
Dinv21944 Davidia involucrata HOM05D000262 ORTHO05D000300 1.5e-06 55.5 44 65.9
Sed0012204 Sechium edule HOM05D000262 ORTHO05D000300 1.5e-06 55.5 44 68.2
Actinidia32979 Actinidia chinensis HOM05D000262 ORTHO05D000300 2.5e-06 54.7 44 65.9
MBI02_g19400_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 2.5e-06 54.7 44 56.8
TPR.G22882 Trifolium pratense HOM05D000262 ORTHO05D000300 2.5e-06 54.7 46 80.4
Ah.03g142610 Amaranthus hybridus HOM05D000262 ORTHO05D000300 3.2e-06 54.3 45 64.4
Haze_24994 Corylus avellana HOM05D000262 ORTHO05D000300 3.2e-06 54.3 44 68.2
MELO3C007779.2 Cucumis melo HOM05D000262 ORTHO05D000300 3.2e-06 54.3 44 63.6
CsaV3_6G045690 Cucumis sativus L. HOM05D000262 ORTHO05D000300 3.2e-06 54.3 44 63.6
Lsat_1_v5_gn_5_41621 Lactuca sativa HOM05D000262 ORTHO05D000300 3.2e-06 54.3 44 65.9
Sed0019146 Sechium edule HOM05D000262 ORTHO05D000300 3.2e-06 54.3 44 68.2
Atru.chr4.247 Acer truncatum HOM05D000262 ORTHO05D000300 4.2e-06 53.9 44 79.5
vmacro12937 Vaccinium macrocarpon HOM05D000262 ORTHO05D000300 4.2e-06 53.9 44 65.9
Lalb_Chr12g0203661 Lupinus albus HOM05D000262 ORTHO05D000300 5.5e-06 53.5 44 63.6
Sp7g36190 Schrenkiella parvula HOM05D000262 ORTHO05D000300 5.5e-06 53.5 45 62.2
Aqoxy4G01324 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 7.2e-06 53.1 44 65.9
Aqoxy5G01960 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 7.2e-06 53.1 44 65.9
BcaNung00892 Brassica carinata HOM05D000262 ORTHO05D000300 7.2e-06 53.1 45 62.2
BcaNung05546 Brassica carinata HOM05D000262 ORTHO05D000300 7.2e-06 53.1 45 62.2
A01p00590 Brassica napus HOM05D000262 ORTHO05D000300 7.2e-06 53.1 45 62.2
C01p00720 Brassica napus HOM05D000262 ORTHO05D000300 7.2e-06 53.1 45 62.2
BolC1t00075H Brassica oleracea HOM05D000262 ORTHO05D000300 7.2e-06 53.1 45 62.2
BraA01t00067Z Brassica rapa HOM05D000262 ORTHO05D000300 7.2e-06 53.1 45 62.2
TAR628G0665 Trochodendron aralioides HOM05D000262 ORTHO05D000300 7.2e-06 53.1 44 63.6
Aqoxy6G00546 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 9.5e-06 52.8 45 73.3
arahy.Tifrunner.gnm1.ann1.T449ZD Arachis hypogaea HOM05D000262 ORTHO05D000300 9.5e-06 52.8 44 79.5
arahy.Tifrunner.gnm1.ann1.V8TWEN Arachis hypogaea HOM05D000262 ORTHO05D000300 9.5e-06 52.8 44 79.5
MSTRG.2551 Avicennia marina HOM05D000262 ORTHO05D000300 9.5e-06 52.8 44 63.6
Lj2A556T30 Lonicera japonica HOM05D000262 ORTHO05D000300 9.5e-06 52.8 44 65.9
Peaxi162Scf00204g00096 Petunia axillaris HOM05D000262 ORTHO05D000300 9.5e-06 52.8 44 61.4


User provided reference genes

Program Settings