Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 3.7e-42 174.5 90 100.0
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 2.8e-37 158.3 87 86.2
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 2.8e-37 158.3 86 86.0
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 4.7e-37 157.5 90 85.6
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 4.7e-37 157.5 86 84.9
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 4.7e-37 157.5 86 84.9
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 1.1e-36 156.4 90 84.4
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 1.1e-36 156.4 90 82.2
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 1.4e-36 156.0 86 87.2
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 1.4e-36 156.0 86 82.6
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 1.4e-36 156.0 90 84.4
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 83.3
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 83.3
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 83.3
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 81.1
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 3.1e-36 154.8 90 82.2
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 4.0e-36 154.5 90 82.2
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 4.0e-36 154.5 90 81.1
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 5.2e-36 154.1 90 83.3
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 5.2e-36 154.1 90 82.2
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 81.1
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 82.2
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 82.2
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 80.0
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 82.2
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 80.0
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 80.0
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 80.0
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 81.1
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 78.9
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 3.4e-35 151.4 90 82.2
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 4.4e-35 151.0 88 79.5
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 4.4e-35 151.0 90 75.6
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 7.5e-35 150.2 88 79.5
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 9.8e-35 149.8 86 82.6
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 9.8e-35 149.8 90 80.0
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 76.7
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 76.7
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 75.6
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 4.9e-34 147.5 86 82.6
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 4.9e-34 147.5 86 82.6
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 4.9e-34 147.5 99 72.7
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 4.9e-34 147.5 88 78.4
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 75.6
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 75.6
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 8.3e-34 146.7 90 76.7
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 8.3e-34 146.7 86 79.1
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 1.1e-33 146.4 90 76.7
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 1.1e-33 146.4 90 75.6
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 80.0
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 73.3
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 73.3
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 73.3
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 1.9e-33 145.6 88 77.3
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.9e-33 145.6 88 78.4
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 75.6
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 75.6
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 74.4
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 75.6
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 4.1e-33 144.4 86 77.9
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 4.1e-33 144.4 86 81.4
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 74.4
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 9.2e-33 143.3 89 75.3
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 9.2e-33 143.3 84 78.6
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 74.4
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 1.2e-32 142.9 97 73.2
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 74.4
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 73.3
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 72.2
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 72.2
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 73.3
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 2.1e-32 142.1 90 73.3
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 2.7e-32 141.7 91 76.9
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 2.7e-32 141.7 91 76.9
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 2.7e-32 141.7 88 76.1
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 2.7e-32 141.7 87 75.9
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 4.6e-32 141.0 90 71.1
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 6.0e-32 140.6 91 76.9
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 72.2
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 6.0e-32 140.6 89 76.4
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 1.0e-31 139.8 90 72.2
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 1.0e-31 139.8 90 70.0
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 1.0e-31 139.8 89 75.3
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 1.0e-31 139.8 89 75.3
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 1.0e-31 139.8 88 76.1
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 2.3e-31 138.7 90 70.0
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 2.3e-31 138.7 90 73.3
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 2.3e-31 138.7 90 75.6
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 73.3
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 1.1e-30 136.3 90 74.4
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 7.3e-30 133.7 88 70.5
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 9.5e-30 133.3 94 71.3
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 1.6e-29 132.5 88 72.7
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 8.1e-29 130.2 84 76.2
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 1.1e-28 129.8 76 78.9
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 1.4e-28 129.4 90 66.7
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 5.2e-28 127.5 124 53.2
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 1.5e-27 125.9 70 84.3
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 2.0e-27 125.6 86 70.9
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 2.0e-27 125.6 97 66.0
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 2.6e-27 125.2 86 69.8
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 5.8e-27 124.0 69 84.1
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 2.2e-26 122.1 70 78.6
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 8.3e-26 120.2 73 76.7
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 8.3e-26 120.2 86 66.3
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 3.5e-24 114.8 68 79.4
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 1.0e-23 113.2 63 81.0
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 1.3e-23 112.8 88 65.9
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.3e-23 112.1 66 77.3
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 5.1e-23 110.9 71 77.5
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 2.1e-21 105.5 72 72.2
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 6.2e-21 104.0 57 86.0
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 1.4e-20 102.8 60 81.7
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 3.1e-20 101.7 69 65.2
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 1.2e-19 99.8 80 67.5
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 3.4e-19 98.2 77 66.2
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 9.9e-19 96.7 90 55.6
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 6.0e-16 87.4 51 82.4
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 1.2e-13 79.7 93 46.2
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 1.4e-12 76.3 90 48.9
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 1.5e-11 72.8 53 69.8
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 8.4e-10 67.0 47 68.1
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 1.9e-06 55.8 41 61.0
AUR62016546 Chenopodium quinoa HOM05D006090 ORTHO05D007600 1.9e-06 55.8 51 52.9
arahy.Tifrunner.gnm1.ann1.3U8U6D Arachis hypogaea HOM05D054567 ORTHO05D007600 7.3e-06 53.9 33 63.6


User provided reference genes

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