Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 2.6e-172 608.6 305 100.0
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 5.2e-104 381.7 269 72.9
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 4.9e-102 375.2 269 71.4
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.1e-93 347.4 248 70.2
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.4e-93 347.1 272 66.2
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 5.4e-93 345.1 253 68.0
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.4e-93 345.1 278 64.7
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 9.2e-93 344.4 273 64.8
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 9.2e-93 344.4 287 64.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.2e-92 344.0 293 59.7
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.1e-92 343.2 293 63.5
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.5e-92 342.4 278 64.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 3.0e-91 339.3 284 62.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.3e-90 335.5 264 67.0
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.1e-89 333.2 283 63.6
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 3.6e-89 332.4 278 60.8
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 4.7e-89 332.0 271 64.9
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 4.0e-88 328.9 272 64.3
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.2e-87 327.4 271 63.8
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 3.4e-87 325.9 279 60.9
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 9.9e-87 324.3 270 64.1
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.7e-86 323.6 271 63.5
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 2.2e-86 323.2 271 63.5
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 3.9e-83 312.4 272 61.4
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.3e-82 309.3 262 61.8
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 9.6e-82 307.8 275 58.9
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 3.6e-81 305.8 275 56.4
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 8.1e-81 304.7 266 59.0
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 2.4e-80 303.1 284 57.0
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.1e-80 302.8 266 61.7
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 6.9e-80 301.6 279 59.1
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.0e-79 300.1 266 60.9
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.6e-79 299.7 271 56.8
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 4.4e-79 298.9 273 58.2
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.8e-79 298.5 266 60.5
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 9.9e-79 297.7 275 56.0
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.3e-78 297.4 254 59.1
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.9e-78 295.4 248 61.7
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 7.1e-77 291.6 248 62.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 7.1e-77 291.6 274 58.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.6e-76 290.4 271 59.0
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.0e-75 287.7 252 59.9
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.3e-75 287.3 271 57.2
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.7e-75 287.0 271 59.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.7e-75 287.0 272 56.6
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.3e-75 286.6 271 57.2
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.0e-75 286.2 275 54.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 5.1e-75 285.4 274 57.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.1e-74 284.3 262 56.5
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.5e-74 283.1 248 60.9
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.6e-73 280.4 277 57.4
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 2.1e-73 280.0 274 55.5
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.6e-73 279.3 252 59.1
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.1e-72 277.7 292 54.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.1e-72 277.7 248 58.1
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.8e-72 276.9 295 53.6
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.3e-72 275.4 249 57.8
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 5.3e-72 275.4 279 53.8
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 5.3e-72 275.4 246 59.3
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 6.9e-72 275.0 278 53.6
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.2e-71 274.2 342 50.0
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.5e-71 273.9 244 58.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.5e-71 273.9 249 56.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 3.4e-71 272.7 292 51.7
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 9.9e-71 271.2 245 57.6
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 9.9e-71 271.2 266 55.6
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.3e-70 270.8 277 54.5
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.2e-70 270.0 274 55.1
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 4.9e-70 268.9 274 52.6
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 4.9e-70 268.9 307 53.1
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 6.4e-70 268.5 247 57.1
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 8.4e-70 268.1 249 55.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 4.2e-69 265.8 249 57.0
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 9.3e-69 264.6 255 55.7
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.5e-68 262.7 249 55.0
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 4.6e-68 262.3 290 52.8
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 7.9e-68 261.5 245 56.7
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 7.9e-68 261.5 197 66.5
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.8e-67 260.4 246 55.3
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 8.7e-67 258.1 271 52.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.1e-66 257.7 250 54.8
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.9e-66 256.9 294 51.7
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 4.8e-65 252.3 279 50.9
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.2e-63 247.7 261 52.9
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 4.5e-63 245.7 275 52.4
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.9e-62 243.0 274 51.1
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.2e-60 237.7 253 50.6
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.6e-60 237.3 271 51.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.6e-60 235.7 270 49.3
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.3e-59 234.2 253 50.2
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.5e-58 229.9 249 50.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 7.4e-58 228.4 273 46.2
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.4e-56 224.2 275 44.4
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.8e-56 223.8 289 46.0
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 4.0e-56 222.6 293 46.4
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.7e-54 217.2 190 62.1
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.3e-51 207.6 247 45.3
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.9e-51 206.1 198 53.5
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.1e-50 204.5 246 46.7
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.1e-48 198.0 192 55.2
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.2e-47 194.5 267 42.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.0e-47 193.7 234 49.1
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.0e-46 191.4 196 58.2
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 3.8e-46 189.5 171 57.3
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 7.2e-45 185.3 281 40.2
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.1e-37 161.4 135 58.5
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 4.2e-37 159.5 160 50.0
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.7e-33 147.5 200 42.5
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.5e-31 141.0 157 47.1
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.7e-30 137.5 251 35.1
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 3.8e-30 136.3 163 44.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-28 131.3 194 43.3
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.0e-27 128.3 119 56.3
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 5.2e-27 125.9 102 63.7
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 6.7e-27 125.6 155 47.7
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-26 122.9 137 52.6
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.2e-22 110.5 180 41.1
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.2e-22 110.5 180 41.1
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 3.2e-21 106.7 205 38.5
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 5.5e-21 105.9 176 40.9
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 1.0e-19 101.7 192 38.0
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.8e-19 100.9 163 39.3
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.7e-17 94.4 62 72.6
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.3e-16 89.4 122 41.0
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-15 87.8 150 40.0
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.2e-14 84.0 87 50.6
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-13 81.3 63 65.1
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-13 81.3 63 65.1
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 4.2e-13 79.7 96 41.7
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 4.2e-13 79.7 63 58.7
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 5.5e-13 79.3 65 56.9
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.0e-11 75.1 135 40.0
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 3.0e-11 73.6 121 32.2
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 9.8e-10 68.6 178 29.2
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 4.8e-09 66.2 68 51.5
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 4.8e-09 66.2 68 51.5
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 2.4e-08 63.9 173 30.6


User provided reference genes

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