Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.3e-140 503.1 253 100.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.3e-121 439.9 252 87.3
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.5e-117 426.4 252 83.3
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.7e-116 422.9 252 84.1
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.2e-116 422.5 248 83.9
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.9e-115 419.5 254 82.3
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.4e-115 419.1 252 82.5
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.4e-115 419.1 252 82.5
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 3.2e-115 418.7 252 83.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.7e-114 415.6 252 81.0
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 6.0e-114 414.5 252 82.1
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 6.0e-114 414.5 252 81.3
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.3e-113 413.3 252 82.5
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.3e-113 413.3 252 81.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-113 413.3 252 81.3
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.3e-113 413.3 252 80.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.8e-113 412.9 251 81.3
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.3e-113 412.5 252 81.0
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.3e-113 412.5 252 81.0
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.3e-113 412.5 252 81.7
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 5.1e-113 411.4 252 81.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.9e-112 409.5 276 76.4
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.5e-112 409.1 251 79.7
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 7.4e-112 407.5 252 78.6
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 6.2e-111 404.4 252 78.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.0e-110 401.7 252 78.2
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 5.3e-110 401.4 242 82.2
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.3e-110 401.4 249 79.5
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 5.3e-110 401.4 246 78.0
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 6.9e-110 401.0 247 78.5
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 9.0e-110 400.6 252 79.4
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 9.0e-110 400.6 248 77.4
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 9.0e-110 400.6 252 78.2
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.4e-109 398.7 248 77.0
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 5.8e-109 397.9 252 78.2
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.3e-108 396.7 252 77.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.8e-108 395.2 243 79.0
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 4.9e-108 394.8 252 77.4
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 6.4e-108 394.4 243 78.6
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 8.4e-108 394.0 246 78.0
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 8.4e-108 394.0 228 82.9
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.1e-107 393.7 248 76.6
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.4e-107 392.5 249 79.1
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 4.2e-107 391.7 252 76.6
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 4.2e-107 391.7 252 77.4
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 4.2e-107 391.7 252 77.4
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.2e-107 391.7 246 77.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 5.5e-107 391.3 252 76.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 5.5e-107 391.3 246 77.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 7.1e-107 391.0 246 77.2
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.6e-106 389.8 262 74.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.6e-106 389.8 246 77.2
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.5e-106 388.7 251 77.7
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 4.6e-106 388.3 243 78.6
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 4.6e-106 388.3 248 77.0
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 4.6e-106 388.3 248 76.6
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.0e-106 387.9 243 79.4
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 6.0e-106 387.9 245 78.4
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 6.0e-106 387.9 249 78.7
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 7.9e-106 387.5 246 77.2
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.0e-105 387.1 252 76.2
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.3e-105 386.0 252 75.0
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.3e-105 386.0 249 76.3
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 3.0e-105 385.6 252 75.8
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 6.7e-105 384.4 282 70.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.5e-104 383.3 251 74.1
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.9e-104 382.9 229 80.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-104 382.5 242 76.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.5e-104 382.5 248 75.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.3e-104 382.1 252 74.2
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.3e-104 382.1 267 73.8
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.3e-104 382.1 231 79.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.3e-104 381.7 248 75.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.6e-104 381.3 245 75.9
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 5.6e-104 381.3 243 77.0
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 9.6e-104 380.6 252 76.2
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 9.6e-104 380.6 252 73.4
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-103 380.2 252 73.4
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.3e-103 380.2 252 73.4
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-103 380.2 246 76.0
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.1e-103 379.4 255 75.7
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.1e-103 379.4 252 74.6
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 2.1e-103 379.4 248 75.4
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 3.7e-103 378.6 252 74.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 6.2e-103 377.9 243 76.5
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.1e-102 377.1 252 73.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.1e-102 377.1 252 73.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.1e-102 377.1 252 73.4
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.8e-102 376.3 251 75.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.4e-102 375.9 243 75.3
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 4.0e-102 375.2 287 68.6
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.6e-101 372.5 251 74.5
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.6e-101 372.5 244 76.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 7.6e-101 370.9 229 79.0
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.3e-100 370.2 223 80.3
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.8e-100 368.6 235 76.6
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.2e-99 365.5 224 77.7
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 7.9e-98 360.9 321 61.4
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.0e-97 360.5 302 63.6
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 8.7e-97 357.5 243 73.3
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.5e-96 356.7 229 77.7
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.7e-96 354.8 241 74.7
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-95 352.8 253 71.1
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.8e-95 352.4 241 74.3
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 4.8e-95 351.7 219 77.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 8.2e-95 350.9 238 73.1
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.4e-94 349.4 245 70.2
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.0e-92 344.0 241 69.3
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.2e-91 339.0 201 82.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 3.6e-90 335.5 252 69.4
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.1e-90 334.7 208 79.8
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 5.1e-89 331.6 248 67.3
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.5e-88 330.1 245 68.2
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.5e-88 329.3 216 75.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.5e-88 329.3 216 75.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.8e-86 323.2 212 75.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 4.5e-85 318.5 190 80.5
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.8e-84 315.5 226 65.9
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 9.4e-83 310.8 259 64.1
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.7e-82 309.3 226 66.4
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.7e-82 309.3 223 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.4e-80 301.2 213 67.6
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 8.5e-76 287.7 220 63.6
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.7e-71 273.5 255 55.3
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 7.2e-67 258.1 230 58.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.8e-65 253.4 245 57.1
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.1e-62 244.2 216 56.5
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.3e-60 237.3 242 49.6
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.7e-60 236.9 220 53.2
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.9e-60 236.1 376 40.4
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.2e-58 230.7 140 80.7
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 9.8e-56 221.1 140 76.4
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-52 210.7 132 76.5
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 4.2e-51 205.7 134 73.1
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.9e-47 192.2 234 43.6
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.9e-47 192.2 257 40.9
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.4e-46 188.7 254 41.3
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.3e-44 183.3 112 79.5
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.6e-42 177.2 110 78.2
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 8.0e-42 174.9 165 58.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.0e-40 170.2 99 84.8
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 3.7e-39 166.0 122 68.0
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.6e-37 160.6 97 82.5
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 4.0e-33 146.0 109 62.4
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.4e-30 137.5 81 80.2
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.5e-27 126.7 101 66.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 6.2e-26 122.1 92 66.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.4e-22 110.9 111 57.7
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.4e-22 110.9 67 77.6
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 3.2e-22 109.8 107 58.9
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 6.0e-21 105.5 77 66.2
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.4e-06 57.0 178 31.5


User provided reference genes

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