Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 4.0e-164 581.6 357 100.0
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 6.8e-95 351.7 351 69.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.6e-88 330.5 363 60.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 9.5e-81 304.7 348 58.6
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 9.5e-81 304.7 352 58.2
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.0e-79 301.2 351 59.3
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 2.0e-78 297.0 345 58.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.0e-78 297.0 346 59.0
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.5e-78 295.0 346 57.2
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 5.4e-76 288.9 318 63.2
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 2.7e-75 286.6 284 64.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.3e-74 284.3 363 51.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.0e-74 283.1 341 52.5
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.5e-73 280.0 294 59.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.6e-72 277.3 343 58.6
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-72 277.3 345 58.3
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 6.2e-72 275.4 342 56.4
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-71 274.2 341 53.4
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 8.9e-71 271.6 342 53.8
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.4e-70 269.2 342 54.4
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.2e-68 263.1 341 51.6
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 9.2e-68 261.5 344 53.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 9.2e-68 261.5 342 48.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 3.5e-67 259.6 345 53.0
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 4.6e-67 259.2 296 60.8
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.3e-66 256.9 339 54.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 3.0e-66 256.5 344 50.6
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 6.6e-66 255.4 386 47.4
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.1e-65 254.6 335 55.2
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.9e-65 253.8 340 52.1
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.5e-65 253.4 337 54.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 9.5e-65 251.5 335 54.3
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.5e-65 251.5 335 54.3
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.1e-64 250.4 341 54.0
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.8e-64 250.0 348 54.0
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 4.7e-64 249.2 341 49.6
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 6.2e-64 248.8 342 47.1
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 8.1e-64 248.4 340 51.5
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 6.8e-63 245.4 343 52.8
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.9e-63 245.0 341 51.3
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 5.8e-62 242.3 338 54.1
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.5e-62 241.9 351 51.9
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.3e-61 241.1 279 61.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 3.7e-61 239.6 318 54.1
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 4.9e-61 239.2 348 52.3
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 4.9e-61 239.2 307 49.2
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 6.4e-61 238.8 341 52.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 8.3e-61 238.4 348 53.4
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 4.1e-60 236.1 345 49.9
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 5.4e-60 235.7 366 46.7
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 7.1e-60 235.3 344 51.5
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 9.2e-60 235.0 307 52.1
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.5e-59 233.0 312 54.2
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.0e-58 231.5 346 46.0
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.0e-58 231.5 346 49.7
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 3.9e-58 229.6 346 50.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 6.6e-58 228.8 340 45.9
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.1e-57 228.0 343 49.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.5e-57 227.6 333 51.7
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.5e-57 226.9 351 51.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 5.6e-57 225.7 349 50.7
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.3e-57 225.3 299 53.8
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-56 224.6 340 50.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.1e-56 223.8 345 48.7
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.1e-56 223.8 339 48.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 8.1e-56 221.9 344 48.3
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.1e-56 221.9 350 49.4
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.1e-55 221.5 348 49.4
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.2e-54 218.0 510 38.4
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 2.0e-54 217.2 339 51.0
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.2e-53 213.8 209 68.9
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.1e-52 211.5 335 44.2
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.2e-52 209.9 346 48.8
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 4.1e-52 209.5 294 50.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.1e-52 209.5 287 48.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 2.7e-51 206.8 260 55.4
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 4.6e-51 206.1 281 50.9
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 7.8e-51 205.3 334 43.1
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.0e-50 204.9 284 47.5
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.7e-50 204.1 314 49.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.9e-50 203.0 306 44.8
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 5.1e-50 202.6 337 42.1
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 6.6e-50 202.2 317 43.8
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.9e-49 200.7 294 52.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.9e-49 200.7 291 51.5
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.3e-49 199.5 294 50.7
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 5.6e-49 199.1 304 42.1
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 5.6e-49 199.1 335 46.3
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.2e-48 198.0 274 53.3
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.1e-47 194.9 306 42.5
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 4.0e-47 193.0 241 61.0
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.2e-46 191.4 289 51.6
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.5e-46 191.0 418 39.0
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 2.0e-46 190.7 357 46.2
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 3.4e-46 189.9 258 48.4
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 9.9e-46 188.3 310 50.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.3e-45 188.0 309 47.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.2e-45 187.2 334 43.4
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 4.9e-45 186.0 341 38.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.4e-45 185.7 334 41.3
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.1e-44 184.9 350 40.6
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.1e-44 184.9 309 43.7
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.2e-43 181.4 287 41.5
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.1e-43 180.6 356 39.0
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.3e-42 177.9 288 42.4
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.9e-42 176.4 295 41.7
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-41 173.3 253 50.2
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 4.3e-41 172.9 335 39.7
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.4e-39 167.9 296 39.2
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 4.0e-39 166.4 296 38.9
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.7e-37 161.0 290 40.7
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.2e-37 160.6 294 40.8
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.2e-37 160.6 300 38.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 5.4e-36 156.0 290 39.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.3e-34 151.4 291 36.1
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.8e-34 151.0 305 37.7
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 6.7e-34 149.1 334 35.3
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.5e-33 147.1 306 42.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.5e-33 147.1 309 33.3
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.6e-32 144.4 308 35.7
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 2.1e-32 144.1 290 35.5
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 6.2e-32 142.5 288 34.7
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.8e-31 141.0 336 36.9
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.8e-24 117.1 130 53.8
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.9e-21 107.1 126 55.6
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.1e-20 105.1 355 33.0
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.4e-20 104.8 234 34.6
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 2.5e-20 104.0 190 37.4
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.9e-17 94.4 308 31.8
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.3e-17 93.6 265 31.3
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.4e-17 92.4 170 37.6
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.8e-16 90.5 230 43.0
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 3.7e-16 90.1 262 34.4
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.8e-15 87.8 308 29.2
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.9e-15 85.9 113 52.2
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 1.3e-13 81.6 70 60.0
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.2e-13 80.9 96 54.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.2e-13 80.9 105 48.6
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 6.1e-11 72.8 90 47.8
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.8e-10 71.2 91 46.2
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.3e-09 67.0 79 54.4
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.3e-08 65.1 46 69.6
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.2e-08 64.3 226 28.3
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 4.5e-06 56.6 275 29.8
Pp3c17_20470 Physcomitrium patens HOM05D025852 ORTHO05D031190 5.9e-06 56.2 148 33.1


User provided reference genes

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