Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 2.7e-56 221.9 121 100.0
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 5.0e-34 147.9 119 63.9
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 2.0e-22 109.4 135 48.1
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 7.5e-22 107.5 122 50.0
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 2.9e-21 105.5 133 50.4
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 2.4e-20 102.4 125 45.6
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 3.2e-20 102.1 77 63.6
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 4.1e-20 101.7 135 42.2
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 4.1e-20 101.7 77 64.9
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 7.0e-20 100.9 135 42.2
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 1.2e-19 100.1 107 51.4
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.0e-19 99.4 135 42.2
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.7e-19 99.0 107 51.4
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 3.5e-19 98.6 118 47.5
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 7.8e-19 97.4 118 50.8
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 2.3e-18 95.9 136 44.9
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 3.0e-18 95.5 112 48.2
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 6.6e-18 94.4 101 49.5
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 7.3e-17 90.9 118 45.8
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 9.5e-17 90.5 74 58.1
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 9.5e-17 90.5 76 57.9
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 1.2e-16 90.1 72 56.9
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.2e-16 90.1 75 58.7
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 1.6e-16 89.7 108 46.3
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 3.1e-15 85.5 75 54.7
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 5.2e-15 84.7 78 51.3
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 5.2e-15 84.7 85 50.6
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 6.8e-15 84.3 124 44.4
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 6.8e-15 84.3 78 52.6
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 8.9e-15 84.0 71 56.3
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 8.9e-15 84.0 75 53.3
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 1.2e-14 83.6 124 44.4
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.5e-14 83.2 76 52.6
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.5e-14 83.2 76 52.6
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 2.0e-14 82.8 78 53.8
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 3.4e-14 82.0 77 49.4
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 4.4e-14 81.6 102 43.1
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 9.8e-14 80.5 78 53.8
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 1.3e-13 80.1 75 52.0
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 1.7e-13 79.7 78 51.3
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 3.7e-13 78.6 77 50.6
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 3.7e-13 78.6 78 52.6
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 3.7e-13 78.6 130 38.5
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 3.7e-13 78.6 78 50.0
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 4.9e-13 78.2 78 52.6
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.3e-13 77.4 104 43.3
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 3.2e-12 75.5 68 51.5
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 1.6e-11 73.2 83 43.4
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 2.7e-11 72.4 74 45.9
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 4.6e-11 71.6 79 48.1
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 6.0e-11 71.2 77 46.8
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 1.7e-10 69.7 76 50.0
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 2.3e-10 69.3 62 51.6
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 1.1e-09 67.0 74 45.9
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 1.1e-09 67.0 62 48.4
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 7.3e-09 64.3 78 43.6
A03p46540 Brassica napus HOM05D010173 ORTHO05D007801 1.6e-08 63.2 70 41.4
BraA03t13778Z Brassica rapa HOM05D010173 ORTHO05D007801 1.6e-08 63.2 70 41.4
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 2.8e-08 62.4 78 42.3
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 4.7e-08 61.6 62 46.8
BcaNung02618 Brassica carinata HOM05D010173 ORTHO05D007801 8.1e-08 60.8 107 33.6
C07p44600 Brassica napus HOM05D010173 ORTHO05D007801 8.1e-08 60.8 107 33.6
BolC7t44981H Brassica oleracea HOM05D010173 ORTHO05D007801 8.1e-08 60.8 107 33.6
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 1.1e-07 60.5 92 38.0
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 1.4e-07 60.1 67 46.3
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 1.8e-07 59.7 107 35.5
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 5.2e-07 58.2 76 39.5
HPP92_019460 Vanilla planifolia HOM05D007643 ORTHO05D007801 5.2e-07 58.2 96 38.5
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 6.8e-07 57.8 38 65.8
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 6.8e-07 57.8 69 47.8
BcaNung02617 Brassica carinata HOM05D010173 ORTHO05D007801 8.9e-07 57.4 74 37.8
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 1.2e-06 57.0 81 40.7
BcaC06g33198 Brassica carinata HOM05D010173 ORTHO05D007801 1.2e-06 57.0 79 38.0
BcaNung05759 Brassica carinata HOM05D010173 ORTHO05D007801 1.2e-06 57.0 79 38.0
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 1.2e-06 57.0 62 45.2
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 1.5e-06 56.6 83 42.2
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 1.5e-06 56.6 64 46.9
Hund02541 Selenicereus undatus HOM05D007643 ORTHO05D007801 4.4e-06 55.1 122 34.4
Zm00001eb101340 Zea mays HOM05D007643 ORTHO05D007801 9.9e-06 53.9 77 40.3


User provided reference genes

Program Settings