Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.1e-200 702.2 366 100.0
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.1e-156 557.0 366 82.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.7e-136 488.4 401 70.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.0e-130 469.2 390 69.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.7e-130 467.6 390 69.5
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.5e-129 466.1 408 67.9
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 7.6e-118 427.9 406 60.8
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.4e-116 423.7 390 64.4
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 5.1e-114 415.2 409 59.4
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 4.8e-112 408.7 407 60.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.5e-109 398.3 404 56.7
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.6e-107 393.7 419 57.8
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.6e-107 393.7 419 57.8
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.3e-105 386.0 414 57.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-103 380.6 413 55.4
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.0e-101 374.4 403 58.3
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.0e-101 374.4 391 57.5
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 7.2e-100 368.2 404 54.5
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 7.2e-100 368.2 427 51.3
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.6e-99 365.5 400 56.2
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 7.9e-99 364.8 423 53.7
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.5e-97 360.5 400 54.8
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.7e-96 355.9 400 55.2
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.4e-95 353.2 407 52.8
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.1e-95 352.4 437 51.0
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.2e-92 342.8 404 51.0
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 7.2e-92 341.7 393 54.2
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.1e-91 340.1 404 50.5
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.0e-90 337.8 419 53.2
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-90 337.0 405 50.1
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 3.3e-89 332.8 401 52.6
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 6.3e-88 328.6 406 51.2
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.4e-87 326.6 397 50.1
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.1e-87 326.2 389 53.2
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.7e-85 320.5 408 51.7
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 4.2e-84 315.8 402 51.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 9.4e-84 314.7 414 48.8
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 7.4e-81 305.1 418 45.2
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 4.8e-80 302.4 427 46.6
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 8.2e-80 301.6 422 47.2
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.3e-79 298.9 379 47.5
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 3.5e-78 296.2 432 45.8
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.9e-77 293.1 348 52.0
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-77 292.7 417 46.5
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.0e-77 292.4 424 46.0
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.5e-77 291.6 425 45.9
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-76 290.4 425 46.4
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 4.2e-76 289.3 425 45.6
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.1e-75 285.4 375 50.4
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-71 274.6 375 48.0
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-71 274.6 375 48.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.1e-71 271.6 375 47.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.5e-70 269.6 415 49.6
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.5e-70 269.6 415 49.6
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.2e-69 266.9 382 46.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.5e-68 263.5 447 42.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.2e-68 263.1 379 44.6
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-67 261.2 372 46.5
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 6.1e-67 258.8 245 58.4
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.0e-66 258.1 411 45.5
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.2e-64 250.4 387 45.2
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 4.8e-64 249.2 408 43.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 4.1e-63 246.1 453 41.9
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.5e-62 242.7 393 44.0
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.2e-61 240.4 415 47.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.2e-61 240.4 390 43.6
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 2.9e-61 240.0 386 40.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 8.5e-61 238.4 285 50.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.5e-60 237.7 256 55.9
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.5e-60 236.9 373 44.0
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.6e-59 234.2 389 42.7
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.8e-59 233.4 398 43.2
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.2e-58 229.2 437 41.6
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 5.2e-58 229.2 391 38.1
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.2e-57 228.0 363 40.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.6e-57 226.9 375 40.0
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 9.5e-52 208.4 393 39.7
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.5e-49 201.1 354 39.3
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.5e-49 201.1 354 39.3
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.0e-49 200.7 388 40.2
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 9.8e-49 198.4 388 38.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.7e-48 197.6 362 39.5
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.7e-48 197.6 362 39.2
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 3.7e-48 196.4 399 41.9
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.9e-48 196.1 389 40.1
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.4e-47 194.5 421 39.0
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.4e-47 194.5 363 39.9
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 5.9e-46 189.1 408 39.5
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.0e-45 186.8 491 35.2
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.9e-44 184.1 405 39.3
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.3e-44 183.3 491 35.2
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 5.6e-44 182.6 273 44.3
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 8.9e-42 175.3 444 34.9
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-41 174.9 388 36.1
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 4.4e-41 172.9 377 36.9
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 9.8e-41 171.8 404 37.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.3e-40 171.4 482 33.6
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.3e-40 171.4 401 37.2
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 8.3e-40 168.7 395 34.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-39 167.9 435 34.3
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.3e-37 160.6 402 37.3
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.2e-35 154.8 413 35.4
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.2e-35 154.8 426 33.8
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-35 154.5 439 35.1
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.8e-35 153.7 403 35.0
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.8e-35 153.7 403 35.0
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 3.6e-35 153.3 439 34.9
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.6e-35 153.3 377 35.5
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 8.1e-35 152.1 439 35.1
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-34 151.8 452 32.5
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-34 151.4 437 33.9
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-34 151.0 435 32.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-34 151.0 422 33.6
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.8e-34 151.0 406 33.7
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.3e-34 150.6 385 36.9
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 4.0e-34 149.8 172 48.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 8.9e-34 148.7 477 34.6
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-33 148.3 401 35.4
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-33 148.3 401 35.4
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.2e-33 148.3 393 32.6
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.9e-32 143.7 428 32.9
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 6.4e-32 142.5 472 31.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-31 141.0 427 32.8
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.4e-31 140.6 448 31.5
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.4e-31 140.6 351 34.2
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 4.1e-31 139.8 429 33.1
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 2.1e-30 137.5 98 73.5
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.0e-29 133.7 403 32.3
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.1e-28 131.7 366 35.5
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.5e-28 130.6 287 38.3
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 4.3e-28 129.8 365 35.1
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 4.7e-27 126.3 369 30.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 8.1e-27 125.6 476 32.4
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.2e-25 121.7 226 40.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.2e-24 117.5 376 34.3
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.9e-24 117.1 293 39.2
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 8.4e-24 115.5 379 33.2
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 8.4e-24 115.5 379 33.2
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.1e-23 115.2 422 31.0
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.2e-23 113.6 430 30.7
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-20 104.8 445 29.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.3e-20 103.6 190 35.3
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.2e-19 101.7 431 29.9
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 8.1e-19 99.0 449 28.1
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 8.1e-19 99.0 221 39.8
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.3e-16 91.7 171 37.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 8.4e-16 89.0 402 26.4
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.5e-14 83.6 278 28.8
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 1.5e-12 78.2 77 51.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 9.6e-12 75.5 52 71.2
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 9.6e-12 75.5 74 54.1
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.2e-11 72.8 149 36.2
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 1.1e-10 72.0 109 38.5
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-10 71.6 64 65.6
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 8.4e-08 62.4 65 52.3
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.6e-06 58.2 115 35.7
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 3.5e-06 57.0 170 30.0
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 6.0e-06 56.2 130 36.9


User provided reference genes

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