Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 5.6e-62 240.7 119 100.0
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.0e-31 140.2 123 69.9
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.6e-24 116.3 128 56.2
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.3e-23 112.5 119 54.6
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 3.0e-23 112.1 118 55.9
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 5.1e-23 111.3 120 54.2
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.7e-23 110.9 120 58.3
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.9e-22 109.4 119 55.5
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 5.7e-22 107.8 119 55.5
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 7.4e-22 107.5 127 54.3
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 7.4e-22 107.5 120 54.2
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.6e-21 106.3 124 54.8
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 8.2e-21 104.0 119 51.3
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.1e-20 103.6 120 51.7
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 5.3e-20 101.3 121 52.1
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 9.0e-20 100.5 119 47.9
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 2.6e-19 99.0 124 49.2
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.6e-19 99.0 121 48.8
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.4e-19 98.6 124 54.0
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.0e-18 97.1 119 51.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.3e-18 96.7 136 47.8
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 1.7e-18 96.3 120 50.0
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.7e-18 96.3 124 53.2
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.8e-18 95.1 132 51.5
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.5e-18 94.4 121 47.1
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.5e-18 94.4 124 51.6
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 6.5e-18 94.4 119 49.6
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.4e-17 93.2 123 47.2
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 5.5e-17 91.3 112 51.8
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 9.4e-17 90.5 123 49.6
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 9.4e-17 90.5 112 50.9
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.2e-16 90.1 120 49.2
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-16 90.1 119 47.9
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.1e-16 89.4 121 43.8
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.1e-16 89.4 121 43.8
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 3.6e-16 88.6 119 47.9
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 6.1e-16 87.8 120 50.0
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.9e-16 87.4 128 44.5
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 7.9e-16 87.4 119 48.7
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.0e-15 87.0 119 47.1
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.0e-15 87.0 112 51.8
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.4e-15 86.7 119 47.1
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-15 86.3 115 43.5
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.9e-15 85.1 126 43.7
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.9e-15 85.1 119 45.4
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 5.1e-15 84.7 121 47.1
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 8.8e-15 84.0 112 49.1
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 8.8e-15 84.0 124 40.3
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 8.8e-15 84.0 125 46.4
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.1e-14 83.6 120 48.3
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.5e-14 83.2 123 42.3
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 3.3e-14 82.0 130 46.2
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.3e-14 82.0 130 46.2
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 4.3e-14 81.6 116 47.4
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 5.7e-14 81.3 119 42.9
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 5.7e-14 81.3 126 44.4
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 5.7e-14 81.3 113 49.6
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.4e-14 80.9 125 47.2
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.7e-13 79.7 132 43.9
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.8e-13 79.0 128 42.2
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.8e-13 79.0 125 41.6
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 3.7e-13 78.6 126 42.9
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 4.8e-13 78.2 76 55.3
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 6.3e-13 77.8 120 43.3
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 6.3e-13 77.8 122 41.8
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.1e-12 77.0 112 47.3
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-12 77.0 124 47.6
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.4e-12 76.6 124 41.9
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.4e-12 76.6 120 47.5
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.4e-12 75.9 124 46.8
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 2.4e-12 75.9 119 47.1
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.1e-12 75.5 124 47.6
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 4.1e-12 75.1 128 41.4
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 6.9e-12 74.3 62 64.5
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 9.1e-12 73.9 125 44.8
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 1.2e-11 73.6 112 43.8
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.2e-11 73.6 121 46.3
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.5e-11 73.2 85 48.2
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 2.6e-11 72.4 119 41.2
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 4.5e-11 71.6 125 44.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 4.5e-11 71.6 115 37.4
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.9e-11 71.2 120 42.5
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 7.7e-11 70.9 116 38.8
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.0e-10 70.5 119 46.2
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.0e-10 70.5 109 45.0
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.3e-10 70.1 118 44.9
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 1.3e-10 70.1 126 40.5
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.3e-10 70.1 128 43.0
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.3e-10 70.1 128 42.2
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.9e-10 68.9 122 40.2
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.8e-10 68.6 116 44.0
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 5.0e-10 68.2 108 45.4
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.0e-10 68.2 125 42.4
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 5.0e-10 68.2 109 42.2
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 5.0e-10 68.2 121 43.8
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 8.5e-10 67.4 75 53.3
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 8.5e-10 67.4 127 42.5
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 8.5e-10 67.4 123 41.5
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-09 67.0 107 40.2
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.1e-09 67.0 123 40.7
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.1e-09 67.0 125 43.2
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.1e-09 67.0 120 41.7
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.9e-09 66.2 66 57.6
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.9e-09 66.2 82 47.6
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.9e-09 66.2 109 44.0
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 2.5e-09 65.9 124 37.9
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 2.5e-09 65.9 121 38.8
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 4.2e-09 65.1 117 41.9
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 4.2e-09 65.1 123 39.8
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 5.5e-09 64.7 121 41.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 7.2e-09 64.3 109 42.2
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.2e-08 63.5 121 42.1
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 1.2e-08 63.5 75 46.7
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 2.1e-08 62.8 121 39.7
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.7e-08 62.4 123 39.0
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.7e-08 62.4 108 39.8
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 4.7e-08 61.6 112 39.3
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 4.7e-08 61.6 72 52.8
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 6.1e-08 61.2 73 49.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 7.9e-08 60.8 116 43.1
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 7.9e-08 60.8 116 43.1
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 7.9e-08 60.8 123 41.5
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.0e-07 60.5 116 37.9
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.0e-07 60.5 74 47.3
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.4e-07 60.1 61 55.7
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.4e-07 60.1 65 50.8
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 1.4e-07 60.1 116 39.7
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-07 59.7 124 37.9
Sc04g0003730 Simmondsia chinensis HOM05D005816 ORTHO05D006915 3.0e-07 58.9 126 41.3
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 6.7e-07 57.8 44 63.6
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 2.0e-06 56.2 26 92.3
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.0e-06 56.2 117 39.3
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 2.0e-06 56.2 26 92.3
CANSAT64G1761 Cannabis sativa HOM05D005816 ORTHO05D006915 9.7e-06 53.9 173 32.4
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 9.7e-06 53.9 75 45.3


User provided reference genes

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