Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G068400 Manihot esculenta HOM05D008112 ORTHO05D010225 2.7e-52 208.4 105 100.0
Manes.14G102600 Manihot esculenta HOM05D008112 ORTHO05D010225 1.1e-42 176.4 105 82.9
Potri.010G124900 Populus trichocarpa HOM05D008112 ORTHO05D010225 2.8e-25 118.6 110 62.7
Potri.008G120800 Populus trichocarpa HOM05D008112 ORTHO05D010225 6.5e-22 107.5 110 56.4
Cfa018594 Carpinus fangiana HOM05D008112 ORTHO05D010225 2.7e-20 102.1 108 52.8
Thecc.02G230800 Theobroma cacao HOM05D008112 ORTHO05D010225 2.7e-20 102.1 100 55.0
RcHm_v2.0_Chr4g0435171 Rosa chinensis HOM05D008112 ORTHO05D010225 3.0e-19 98.6 119 52.1
Gorai.005G190400 Gossypium raimondii HOM05D008112 ORTHO05D010225 5.2e-19 97.8 105 51.4
Gohir.D02G169900 Gossypium hirsutum HOM05D008112 ORTHO05D010225 8.8e-19 97.1 105 53.3
TAR622G0251 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.2e-18 96.7 107 49.5
TAR371G0405 Trochodendron aralioides HOM05D008112 ORTHO05D010225 2.0e-18 95.9 104 50.0
FvH4_4g27360 Fragaria vesca HOM05D008112 ORTHO05D010225 3.4e-18 95.1 111 49.5
FAN12G3697 Fragaria x ananassa HOM05D008112 ORTHO05D010225 3.4e-18 95.1 111 49.5
FAN12G3827 Fragaria x ananassa HOM05D008112 ORTHO05D010225 3.4e-18 95.1 111 49.5
Nn3g17844 Nelumbo nucifera HOM05D008112 ORTHO05D010225 4.4e-18 94.7 110 50.0
Haze_17483 Corylus avellana HOM05D008112 ORTHO05D010225 2.8e-17 92.0 94 51.1
Gohir.A03G146800 Gossypium hirsutum HOM05D008112 ORTHO05D010225 3.7e-17 91.7 105 48.6
CiPaw.16G065000 Carya illinoinensis HOM05D008112 ORTHO05D010225 8.3e-17 90.5 106 46.2
CiPaw.15G085200 Carya illinoinensis HOM05D008112 ORTHO05D010225 1.1e-16 90.1 113 49.6
FAN07G1645 Fragaria x ananassa HOM05D008112 ORTHO05D010225 1.4e-16 89.7 118 44.9
FAN22G0823 Fragaria x ananassa HOM05D008112 ORTHO05D010225 1.8e-16 89.4 118 45.8
Ciclev10017355m.g Citrus clementina HOM05D008112 ORTHO05D010225 9.1e-16 87.0 78 52.6
Prupe.1G311100 Prunus persica HOM05D008112 ORTHO05D010225 1.2e-15 86.7 109 48.6
Hma1.2p1_0061F.1_g033900 Hydrangea macrophylla HOM05D008112 ORTHO05D010225 3.5e-15 85.1 105 45.7
TAR629G1885 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.3e-14 83.2 76 51.3
CSS0024667 Camellia sinensis var. sinensis HOM05D008112 ORTHO05D010225 3.8e-14 81.6 107 43.9
Cpa.g.sc1.41 Carica papaya HOM05D008112 ORTHO05D010225 6.5e-14 80.9 106 49.1
Sabra10G0094800 Salix brachista HOM05D008112 ORTHO05D010225 1.1e-13 80.1 91 53.8
Glyma.20G115800 Glycine max HOM05D008112 ORTHO05D010225 1.5e-13 79.7 101 42.6
Glyma.10G274200 Glycine max HOM05D008112 ORTHO05D010225 1.9e-13 79.3 108 42.6
Atru.chr11.70 Acer truncatum HOM05D008112 ORTHO05D010225 2.5e-13 79.0 118 41.5
TPR.G1513 Trifolium pratense HOM05D008112 ORTHO05D010225 3.2e-13 78.6 105 46.7
Medtr1g110820 Medicago truncatula HOM05D008112 ORTHO05D010225 1.6e-12 76.3 111 42.3
Glyma.08G262400 Glycine max HOM05D008112 ORTHO05D010225 2.1e-12 75.9 108 45.4
Lsat_1_v5_gn_4_17580 Lactuca sativa HOM05D008112 ORTHO05D010225 3.6e-12 75.1 107 45.8
Phvul.007G027300 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 3.6e-12 75.1 89 46.1
Lj2g0015777 Lotus japonicus HOM05D008112 ORTHO05D010225 6.1e-12 74.3 100 44.0
Rhsim12G0084800 Rhododendron simsii HOM05D008112 ORTHO05D010225 1.4e-11 73.2 109 45.9
TPR.G39819 Trifolium pratense HOM05D008112 ORTHO05D010225 3.0e-11 72.0 101 45.5
Phvul.003G035700 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 6.8e-11 70.9 107 43.0
ClCG05G022690 Citrullus lanatus HOM05D008112 ORTHO05D010225 3.4e-10 68.6 91 36.3
MELO3C012251.2 Cucumis melo HOM05D008112 ORTHO05D010225 3.4e-10 68.6 84 41.7
CsaV3_5G034340 Cucumis sativus L. HOM05D008112 ORTHO05D010225 2.2e-09 65.9 80 41.2
Lalb_Chr10g0100011 Lupinus albus HOM05D008112 ORTHO05D010225 2.8e-09 65.5 106 42.5
Lalb_Chr02g0145981 Lupinus albus HOM05D008112 ORTHO05D010225 6.3e-09 64.3 110 38.2
DCAR_023658 Daucus carota HOM05D008112 ORTHO05D010225 1.8e-08 62.8 119 38.7
Dinv34826 Davidia involucrata HOM05D008112 ORTHO05D010225 1.8e-08 62.8 106 40.6
Lj5g0021475 Lotus japonicus HOM05D008112 ORTHO05D010225 2.4e-08 62.4 97 39.2
Eucgr.B03015 Eucalyptus grandis HOM05D008112 ORTHO05D010225 7.0e-08 60.8 95 37.9
Ah.03g137650 Amaranthus hybridus HOM05D008112 ORTHO05D010225 9.2e-08 60.5 104 39.4
SGA_v2.0_scaffold124G33520 Striga asiatica HOM05D008112 ORTHO05D010225 9.2e-08 60.5 104 39.4
Lalb_Chr06g0166071 Lupinus albus HOM05D008112 ORTHO05D010225 1.2e-07 60.1 93 39.8
Lalb_Chr17g0342121 Lupinus albus HOM05D008112 ORTHO05D010225 3.5e-07 58.5 99 43.4
Sed0024678 Sechium edule HOM05D038709 ORTHO05D010225 3.5e-07 58.5 65 53.8
ClCG08G005370 Citrullus lanatus HOM05D038709 ORTHO05D010225 4.5e-07 58.2 89 46.1
Sed0024639 Sechium edule HOM05D008112 ORTHO05D010225 4.5e-07 58.2 108 37.0
SalBow8G4149 Salvia bowleyana HOM05D008112 ORTHO05D010225 5.9e-07 57.8 85 36.5
Aa31LG2G6430 Aethionema arabicum HOM05D010264 ORTHO05D012423 1.0e-06 57.0 75 44.0
Aqoxy3G00299 Aquilegia oxysepala HOM05D008112 ORTHO05D010225 1.3e-06 56.6 84 38.1
Sc11g0003420 Simmondsia chinensis HOM05D008112 ORTHO05D010225 1.7e-06 56.2 116 35.3
BolC9t56061H Brassica oleracea HOM05D010264 ORTHO05D012423 2.9e-06 55.5 91 36.3
Dinv31638 Davidia involucrata HOM05D008112 ORTHO05D010225 3.8e-06 55.1 73 41.1
AT3G25905 Arabidopsis thaliana HOM05D010264 ORTHO05D012423 5.0e-06 54.7 107 38.3
ECA246G3993 Erigeron canadensis HOM05D008112 ORTHO05D010225 5.0e-06 54.7 92 38.0
THA.LOC109117083 Tarenaya hassleriana HOM05D010264 ORTHO05D012423 5.0e-06 54.7 98 35.7
Migut.E00342 Erythranthe guttata HOM05D008112 ORTHO05D010225 6.6e-06 54.3 113 33.6
BcaC04g21412 Brassica carinata HOM05D010264 ORTHO05D012423 8.6e-06 53.9 90 35.6
CARHR146890 Cardamine hirsuta HOM05D010264 ORTHO05D012423 8.6e-06 53.9 93 34.4


User provided reference genes

Program Settings