Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 5.3e-70 267.7 148 100.0
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 4.0e-49 198.4 152 69.1
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.9e-43 179.5 141 64.5
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 6.8e-25 117.9 125 52.0
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.4e-22 110.2 141 44.0
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 5.4e-22 108.2 136 52.9
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.6e-21 106.7 125 53.6
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 1.6e-21 106.7 126 48.4
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.0e-20 104.0 125 52.0
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.3e-20 103.6 118 54.2
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.7e-20 103.2 132 47.0
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 5.1e-20 101.7 134 50.7
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 1.1e-19 100.5 122 54.1
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 3.3e-19 99.0 134 50.0
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 3.3e-19 99.0 139 45.3
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 2.8e-18 95.9 135 43.0
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 3.6e-18 95.5 140 42.1
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 1.4e-17 93.6 137 41.6
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 1.8e-17 93.2 126 44.4
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 5.2e-17 91.7 118 52.5
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 6.8e-17 91.3 142 47.9
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 6.8e-17 91.3 132 38.6
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 8.9e-17 90.9 135 51.1
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 1.2e-16 90.5 124 45.2
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.6e-16 89.4 125 44.0
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 5.8e-16 88.2 146 47.9
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 5.8e-16 88.2 149 40.9
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 5.8e-16 88.2 121 43.8
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 1.3e-15 87.0 121 54.5
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 2.2e-15 86.3 133 38.3
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 2.2e-15 86.3 140 40.0
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 2.2e-15 86.3 124 44.4
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 2.9e-15 85.9 125 42.4
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 6.4e-15 84.7 131 40.5
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 6.4e-15 84.7 125 42.4
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 8.3e-15 84.3 142 40.8
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.1e-14 84.0 120 39.2
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 1.1e-14 84.0 130 51.5
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.9e-14 83.2 125 40.8
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 4.1e-14 82.0 136 37.5
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 7.1e-14 81.3 134 35.1
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 9.2e-14 80.9 124 46.0
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.2e-13 80.5 136 36.8
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 1.6e-13 80.1 123 37.4
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 2.1e-13 79.7 115 43.5
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 3.5e-13 79.0 136 39.7
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 4.6e-13 78.6 133 36.8
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 6.0e-13 78.2 140 37.1
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 6.0e-13 78.2 129 39.5
FAN16G0402 Fragaria x ananassa HOM05D005932 ORTHO05D006213 6.0e-13 78.2 139 41.0
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 7.8e-13 77.8 123 43.9
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 1.0e-12 77.4 127 38.6
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 3.0e-12 75.9 126 42.1
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 3.0e-12 75.9 142 39.4
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 5.1e-12 75.1 119 42.0
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 6.6e-12 74.7 131 42.7
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 8.6e-12 74.3 125 39.2
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.5e-11 73.6 124 43.5
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.9e-11 73.2 102 38.2
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 2.5e-11 72.8 137 44.5
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 4.3e-11 72.0 138 44.2
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 4.3e-11 72.0 117 41.9
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 5.6e-11 71.6 111 40.5
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 5.6e-11 71.6 130 33.8
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 5.6e-11 71.6 122 32.8
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 7.3e-11 71.2 120 45.0
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 9.5e-11 70.9 123 38.2
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 9.5e-11 70.9 123 38.2
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 9.5e-11 70.9 123 38.2
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 1.2e-10 70.5 124 40.3
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 1.6e-10 70.1 129 34.9
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 2.1e-10 69.7 124 37.1
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 2.1e-10 69.7 133 42.1
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 2.8e-10 69.3 149 33.6
TWI63G1224 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 2.8e-10 69.3 109 45.9
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 3.6e-10 68.9 144 38.9
FAN25G3656 Fragaria x ananassa HOM05D005932 ORTHO05D006213 4.7e-10 68.6 108 46.3
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 4.7e-10 68.6 117 40.2
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 8.1e-10 67.8 126 36.5
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 1.1e-09 67.4 145 35.2
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 1.1e-09 67.4 126 37.3
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 1.1e-09 67.4 134 36.6
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 1.4e-09 67.0 127 33.9
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 1.8e-09 66.6 105 39.0
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 1.8e-09 66.6 128 30.5
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 2.4e-09 66.2 123 35.0
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 2.4e-09 66.2 126 38.1
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 2.4e-09 66.2 144 33.3
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 3.1e-09 65.9 131 38.9
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 4.0e-09 65.5 130 39.2
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 5.2e-09 65.1 111 37.8
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 6.8e-09 64.7 113 35.4
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 1.2e-08 63.9 134 37.3
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 2.0e-08 63.2 145 33.8
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 3.4e-08 62.4 130 34.6
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 7.6e-08 61.2 127 44.1
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 7.6e-08 61.2 138 34.1
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 9.9e-08 60.8 119 35.3
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 9.9e-08 60.8 119 35.3
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 9.9e-08 60.8 119 35.3
Eucgr.E02504 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.3e-07 60.5 136 37.5
Thhalv10026499m.g Eutrema salsugineum HOM05D005932 ORTHO05D006213 1.3e-07 60.5 138 42.0
MELO3C002809.2 Cucumis melo HOM05D005932 ORTHO05D006213 1.7e-07 60.1 91 42.9
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 1.7e-07 60.1 140 37.9
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.7e-07 60.1 120 35.8
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 1.7e-07 60.1 118 34.7
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 2.2e-07 59.7 124 36.3
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 2.2e-07 59.7 134 35.1
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 2.9e-07 59.3 109 38.5
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 4.9e-07 58.5 136 33.8
TPR.G26337 Trifolium pratense HOM05D005932 ORTHO05D006213 6.4e-07 58.2 128 36.7
arahy.Tifrunner.gnm1.ann1.JX8F6E Arachis hypogaea HOM05D005932 ORTHO05D006213 8.4e-07 57.8 131 42.0
BraA09t39118Z Brassica rapa HOM05D012212 ORTHO05D006213 8.4e-07 57.8 138 37.0
AL7G31630 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 1.1e-06 57.4 131 42.0
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.1e-06 57.4 122 36.1
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 1.1e-06 57.4 131 41.2
arahy.Tifrunner.gnm1.ann1.2W5S4G Arachis hypogaea HOM05D005932 ORTHO05D006213 1.4e-06 57.0 136 40.4
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 1.4e-06 57.0 115 34.8
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 1.9e-06 56.6 131 39.7
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 2.4e-06 56.2 134 42.5
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 3.2e-06 55.8 136 33.1
Glyma.15G130200 Glycine max HOM05D005932 ORTHO05D006213 3.2e-06 55.8 124 38.7
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 5.4e-06 55.1 137 32.8
Ca_00842_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 7.1e-06 54.7 114 43.9
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 7.1e-06 54.7 115 33.9
Cpa.g.sc166.34 Carica papaya HOM05D005932 ORTHO05D006213 9.2e-06 54.3 118 38.1
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 9.2e-06 54.3 129 30.2


User provided reference genes

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