Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 8.9e-139 496.9 245 100.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.3e-109 398.7 246 85.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.0e-94 349.0 251 76.1
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 9.7e-93 344.0 272 71.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.2e-89 332.8 252 72.6
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-85 320.5 246 70.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.0e-85 319.7 246 70.7
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.0e-85 319.7 246 70.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 7.7e-82 307.8 252 69.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.2e-80 302.4 258 66.7
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-78 297.0 253 67.6
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.7e-76 290.0 256 65.6
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 4.5e-74 282.0 259 63.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.9e-72 276.6 258 66.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 5.5e-72 275.0 263 62.7
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 7.5e-69 264.6 266 60.2
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.8e-68 261.9 259 59.8
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 6.3e-68 261.5 276 59.8
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.4e-67 260.4 249 61.4
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.7e-66 256.1 266 58.3
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.5e-66 255.8 268 59.7
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.3e-65 253.8 251 60.6
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.5e-64 249.6 273 57.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 4.2e-64 248.8 252 61.1
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.5e-64 248.4 178 77.0
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.6e-63 246.9 275 58.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.1e-63 246.5 258 58.5
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 8.0e-63 244.6 225 63.6
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.4e-62 243.8 237 60.8
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.8e-62 241.5 237 61.2
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 6.8e-62 241.5 252 59.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 3.4e-61 239.2 266 55.3
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 7.5e-61 238.0 264 54.9
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.8e-60 236.1 282 57.1
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.3e-60 235.0 240 59.6
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 7.0e-59 231.5 256 55.5
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 7.0e-59 231.5 253 58.9
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.7e-58 229.6 262 52.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 1.7e-57 226.9 274 52.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 6.5e-57 224.9 267 53.2
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.5e-56 223.0 290 54.1
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.5e-56 221.9 285 54.4
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.5e-56 221.9 285 54.4
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 7.2e-56 221.5 230 57.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 9.5e-56 221.1 265 52.8
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.6e-55 219.2 237 57.8
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.6e-55 219.2 255 54.1
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 4.7e-55 218.8 250 57.2
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.3e-54 216.5 258 52.7
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 6.8e-54 214.9 263 57.8
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.2e-53 214.2 292 51.7
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.6e-53 213.0 271 51.3
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 5.7e-53 211.8 225 58.7
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.3e-52 210.7 256 53.5
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 8.3e-52 208.0 286 51.4
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.4e-51 206.5 241 54.4
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-49 200.3 222 58.1
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 3.8e-49 199.1 267 49.1
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.6e-48 195.3 211 57.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 9.5e-48 194.5 252 54.4
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.8e-47 193.0 238 54.6
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.8e-47 193.0 256 49.6
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 8.0e-47 191.4 229 57.2
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 8.0e-47 191.4 225 55.6
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.4e-46 190.7 237 53.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.8e-46 190.3 218 54.6
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.3e-46 189.9 255 50.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 4.0e-46 189.1 229 52.8
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.8e-46 188.3 274 47.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 8.9e-46 188.0 245 51.4
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.4e-45 186.0 244 50.4
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.9e-44 183.0 272 49.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.1e-43 181.0 231 52.8
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.8e-43 180.3 247 51.4
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 2.4e-43 179.9 220 52.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.2e-42 177.6 298 48.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.5e-42 176.0 253 50.6
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 7.8e-42 174.9 248 50.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 7.8e-42 174.9 248 50.0
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.7e-41 173.7 298 46.6
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 3.0e-41 172.9 247 49.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.9e-41 172.6 284 47.2
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 5.0e-41 172.2 248 49.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.1e-40 171.0 247 49.0
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.5e-40 170.6 260 47.7
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.9e-40 170.2 238 49.6
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.9e-40 170.2 264 46.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.9e-40 170.2 260 46.2
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 2.5e-40 169.9 246 50.4
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 7.3e-40 168.3 253 47.8
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 7.3e-40 168.3 215 47.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 9.5e-40 167.9 247 47.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.2e-39 167.5 245 47.3
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.8e-39 166.4 230 46.1
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 4.7e-39 165.6 195 55.9
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.8e-38 163.7 197 55.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 5.2e-38 162.2 251 46.6
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 6.8e-38 161.8 232 48.7
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.6e-37 159.8 226 48.2
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 4.4e-37 159.1 253 47.4
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 4.9e-36 155.6 196 49.5
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 4.9e-36 155.6 259 44.4
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.7e-34 149.8 245 45.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.0e-33 147.9 269 43.1
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-33 147.5 247 45.3
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 5.0e-33 145.6 243 43.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.1e-32 144.4 142 60.6
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.5e-32 144.1 217 45.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 7.3e-32 141.7 191 52.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.1e-31 140.2 263 42.6
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.8e-31 139.8 238 42.9
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.8e-30 137.1 75 89.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 5.8e-29 132.1 231 42.0
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 7.5e-29 131.7 239 41.4
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.3e-28 131.0 82 76.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 4.9e-28 129.0 221 45.7
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.8e-26 121.7 113 60.2
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.3e-25 120.9 221 41.6
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.3e-25 120.9 176 50.0
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 2.3e-25 120.2 190 47.4
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.9e-25 119.4 196 43.9
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.5e-24 117.5 218 43.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.6e-24 115.5 233 43.8
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.1e-23 113.6 185 47.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.8e-23 113.2 108 58.3
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.6e-23 112.8 236 43.2
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.6e-23 112.8 221 41.2
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.2e-23 112.1 190 46.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.2e-23 112.1 254 37.4
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.1e-22 111.3 154 48.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.1e-22 111.3 106 58.5
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-21 107.5 224 43.3
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-21 107.5 222 44.1
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.5e-21 107.5 222 44.1
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.0e-21 107.1 98 64.3
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.6e-21 106.7 220 38.6
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.4e-21 105.9 231 38.5
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.9e-20 103.2 190 41.1
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 7.1e-19 98.6 203 37.9
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-18 97.8 229 37.6
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 3.5e-18 96.3 254 38.2
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.9e-16 90.5 237 35.4
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 7.3e-16 88.6 172 40.7
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.1e-14 84.7 237 35.4
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.5e-13 80.9 193 38.3
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 5.8e-13 79.0 255 34.5
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.1e-11 74.7 145 40.7
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.1e-10 70.5 68 55.9
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-10 70.5 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-10 70.5 43 74.4
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 1.0e-09 68.2 89 50.6
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 2.3e-09 67.0 223 31.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.1e-09 65.9 152 35.5
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 1.1e-08 64.7 160 35.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.3e-08 63.2 173 34.1
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 3.3e-08 63.2 177 33.3
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.3e-08 62.0 98 41.8
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 9.6e-08 61.6 132 36.4
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.1e-07 60.5 182 35.2
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.4e-06 57.0 61 50.8
MBI13_g29637_MAGBIO Magnolia biondii HOM05D003047 ORTHO05D000627 4.0e-06 56.2 189 27.5
Lj4g0022923 Lotus japonicus HOM05D000333 ORTHO05D000190 5.3e-06 55.8 67 40.3
Carub.0006s2470 Capsella rubella HOM05D008496 ORTHO05D010729 6.9e-06 55.5 173 29.5


User provided reference genes

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