Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 6.9e-185 650.6 352 100.0
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.7e-130 468.8 341 77.7
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.3e-95 354.0 336 66.1
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.3e-95 354.0 339 63.7
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 9.0e-92 341.3 336 66.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.6e-88 328.9 333 65.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 6.0e-88 328.6 336 54.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.7e-85 319.3 335 59.4
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.5e-83 313.9 330 53.0
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.4e-83 312.8 330 52.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.9e-82 309.7 336 56.5
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 2.5e-81 306.6 335 52.5
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.7e-77 292.7 348 55.2
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 3.2e-73 279.6 320 50.9
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.4e-68 263.5 339 53.7
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.1e-68 263.1 324 47.2
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.4e-65 251.5 326 47.2
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 7.9e-64 248.4 317 53.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.5e-62 244.2 319 47.6
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.7e-62 242.3 284 50.0
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.3e-61 241.1 361 45.4
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.4e-60 236.9 358 49.2
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.4e-60 236.9 347 42.7
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 5.3e-60 235.7 347 46.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-59 234.6 358 48.6
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.6e-59 234.2 323 50.5
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.0e-59 233.8 345 47.2
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.9e-59 232.3 356 48.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.0e-58 231.5 323 50.2
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.0e-58 231.5 354 49.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.3e-58 231.1 330 41.2
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.2e-58 230.3 324 43.2
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.9e-58 229.9 324 43.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 9.4e-57 224.9 332 48.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.6e-56 224.2 328 43.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.7e-56 223.4 331 42.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.4e-55 221.1 330 48.2
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.0e-55 219.9 328 41.8
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 4.0e-55 219.5 343 47.8
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.7e-55 218.8 327 42.8
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 6.7e-55 218.8 332 41.9
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 6.7e-55 218.8 334 47.6
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-54 218.0 328 43.0
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.5e-54 217.6 332 50.6
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.0e-54 217.2 343 44.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.0e-54 217.2 327 45.9
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.3e-54 216.5 333 44.1
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.3e-54 216.5 327 45.9
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 9.7e-54 214.9 334 40.4
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.3e-53 214.5 321 48.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.3e-53 214.5 333 40.2
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.8e-53 213.4 324 49.4
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.8e-53 213.4 335 43.9
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.8e-52 210.7 350 38.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.4e-52 210.3 339 38.6
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.3e-52 209.1 336 39.6
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 9.1e-52 208.4 332 39.5
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 9.1e-52 208.4 330 40.0
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.7e-50 204.1 331 46.2
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.7e-50 204.1 329 41.3
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.1e-49 201.4 332 43.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.9e-49 200.7 325 42.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 2.5e-49 200.3 326 42.6
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.5e-49 200.3 305 44.6
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.2e-49 198.7 332 41.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 6.1e-48 195.7 344 41.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 6.1e-48 195.7 339 44.0
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 8.0e-48 195.3 333 43.5
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 8.8e-47 191.8 331 43.2
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.2e-46 191.4 207 54.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 9.8e-46 188.3 339 42.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 9.8e-46 188.3 354 42.4
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 8.3e-45 185.3 347 36.3
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.1e-44 183.3 332 41.0
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 4.1e-44 183.0 332 42.5
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.2e-43 181.4 329 38.3
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.5e-43 179.5 327 38.2
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 7.7e-43 178.7 332 41.3
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-42 177.9 330 41.2
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.3e-42 177.9 331 37.2
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.9e-42 176.8 337 40.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 2.9e-42 176.8 327 40.7
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.8e-42 176.4 335 44.5
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 3.8e-42 176.4 239 46.4
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 5.0e-42 176.0 340 41.8
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 5.0e-42 176.0 333 42.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 6.5e-42 175.6 327 39.4
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.5e-42 175.6 349 39.5
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 6.5e-42 175.6 327 39.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 6.5e-42 175.6 328 40.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.5e-41 174.5 327 38.2
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.5e-41 174.5 327 38.2
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-41 174.5 327 39.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 3.2e-41 173.3 341 40.8
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.1e-40 170.6 331 39.6
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.4e-39 167.9 331 40.8
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 5.2e-39 166.0 330 35.5
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.0e-38 164.1 317 36.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.4e-38 163.3 322 41.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.1e-36 158.3 313 37.1
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.8e-36 157.5 335 34.9
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 2.4e-36 157.1 337 34.4
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 3.1e-36 156.8 330 41.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-35 154.5 330 34.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.7e-35 153.7 325 41.5
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.3e-34 151.4 324 38.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.3e-34 150.6 302 36.8
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 5.0e-34 149.4 321 38.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-33 147.9 295 37.3
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-32 144.8 323 38.1
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.6e-32 144.4 332 39.5
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.1e-32 144.1 325 39.4
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 4.7e-32 142.9 328 38.1
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 4.7e-32 142.9 328 38.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 4.7e-32 142.9 328 38.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 6.1e-32 142.5 321 35.5
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.0e-31 141.7 330 33.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.3e-31 140.6 240 44.6
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 5.2e-31 139.4 312 40.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.2e-29 134.0 318 32.7
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.4e-28 130.6 326 33.1
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.2e-28 130.2 319 41.1
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 3.2e-28 130.2 322 32.6
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.7e-27 127.1 334 30.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.5e-27 126.7 320 35.3
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.0e-26 125.2 158 46.2
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.0e-26 125.2 318 32.4
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.3e-26 124.8 305 39.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.0e-26 123.6 321 32.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.1e-25 121.7 307 32.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.5e-25 121.3 273 32.2
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.3e-25 120.2 320 34.4
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.2e-24 118.2 307 32.6
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.1e-24 117.5 197 38.6
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.6e-24 116.7 305 31.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.4e-23 114.8 199 39.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 3.1e-23 113.6 310 32.9
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 6.8e-23 112.5 315 35.9
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.5e-22 111.3 322 36.6
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 2.6e-22 110.5 270 37.0
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.6e-22 110.5 276 42.4
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.8e-22 109.4 192 43.8
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.2e-21 107.5 283 33.6
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.4e-20 104.0 180 37.8
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 3.2e-20 103.6 202 37.6
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 4.1e-20 103.2 290 38.6
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.3e-18 97.4 286 39.5
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 3.3e-17 93.6 300 34.7
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.3e-17 93.2 315 32.4
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 2.3e-15 87.4 249 38.6
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.4e-14 83.2 319 25.1
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-12 78.2 326 27.0
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 7.3e-09 65.9 167 33.5
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 8.1e-08 62.4 129 34.9
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 6.8e-07 59.3 177 29.4
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 2.6e-06 57.4 220 28.2


User provided reference genes

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