Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 9.8e-124 446.8 227 100.0
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 1.3e-72 276.9 225 64.0
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 1.5e-71 273.5 224 65.2
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 5.7e-71 271.6 223 66.8
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 6.9e-69 264.6 225 62.2
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 6.9e-69 264.6 217 61.8
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 5.8e-68 261.5 225 65.3
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 7.6e-68 261.2 226 61.9
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 2.2e-67 259.6 225 60.4
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 2.9e-67 259.2 225 64.9
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 2.9e-67 259.2 225 64.9
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 3.8e-67 258.8 226 62.8
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 3.8e-67 258.8 227 63.0
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.1e-66 257.3 225 64.4
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 2.7e-65 252.7 224 61.2
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 2.3e-64 249.6 226 59.7
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.1e-63 247.3 226 59.7
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 3.3e-63 245.7 229 61.6
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 3.7e-62 242.3 229 59.4
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 4.8e-62 241.9 223 62.8
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 6.3e-62 241.5 225 61.3
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 8.2e-62 241.1 225 58.7
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 1.1e-61 240.7 225 61.3
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 1.8e-61 240.0 233 59.2
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 5.3e-61 238.4 226 57.5
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 2.0e-60 236.5 224 61.6
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 4.5e-60 235.3 228 59.6
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 1.7e-59 233.4 224 56.7
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 3.8e-59 232.3 221 57.0
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 2.1e-57 226.5 223 55.2
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 2.7e-57 226.1 232 56.5
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 6.1e-57 224.9 232 55.6
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 7.9e-57 224.6 221 57.9
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 1.0e-56 224.2 232 56.0
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 1.4e-56 223.8 217 56.2
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 2.0e-55 219.9 220 53.6
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 5.7e-55 218.4 226 55.8
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 7.4e-55 218.0 228 55.7
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 7.4e-55 218.0 225 55.6
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 9.7e-55 217.6 217 55.3
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.3e-54 217.2 228 55.3
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 1.7e-54 216.9 241 51.5
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 2.8e-54 216.1 229 56.8
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.8e-54 216.1 229 54.6
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 2.8e-54 216.1 269 49.8
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 3.7e-54 215.7 224 55.4
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 4.8e-54 215.3 219 53.0
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 6.3e-54 214.9 238 53.8
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.4e-53 213.8 224 54.9
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 4.1e-53 212.2 214 54.2
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 4.1e-53 212.2 223 51.1
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 9.1e-53 211.1 221 55.2
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 1.2e-52 210.7 227 52.4
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 2.6e-52 209.5 220 52.3
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 4.5e-52 208.8 223 53.4
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 4.5e-52 208.8 170 64.1
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 7.7e-52 208.0 224 54.0
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 1.3e-51 207.2 219 52.5
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 2.2e-51 206.5 232 53.4
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 5.0e-51 205.3 225 53.8
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.1e-50 204.1 236 53.8
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.1e-50 204.1 230 52.2
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 1.4e-50 203.8 227 51.1
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 1.9e-50 203.4 226 57.1
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 2.5e-50 203.0 228 51.3
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 9.4e-50 201.1 219 50.2
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 1.6e-49 200.3 227 49.3
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 2.1e-49 199.9 224 51.3
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 2.1e-49 199.9 235 50.6
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 2.7e-49 199.5 227 50.2
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 2.7e-49 199.5 226 55.3
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 1.0e-48 197.6 233 51.9
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 5.1e-48 195.3 200 58.0
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 1.1e-47 194.1 227 49.8
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 1.1e-47 194.1 230 49.1
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 1.5e-47 193.7 218 51.4
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 2.0e-47 193.4 226 51.3
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 3.3e-47 192.6 224 51.3
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 3.3e-47 192.6 169 60.9
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 7.4e-47 191.4 226 50.9
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 2.2e-46 189.9 226 52.2
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 8.2e-46 188.0 227 51.5
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 4.1e-45 185.7 229 49.8
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 4.5e-44 182.2 229 48.5
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 1.0e-43 181.0 226 50.0
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 5.0e-43 178.7 234 47.9
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 3.2e-42 176.0 232 45.7
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 4.2e-42 175.6 225 47.6
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 1.4e-40 170.6 126 67.5
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 1.1e-39 167.5 218 46.8
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 3.3e-39 166.0 224 46.4
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 3.3e-39 166.0 221 47.1
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 2.8e-38 162.9 225 42.7
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 8.2e-38 161.4 331 37.5
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 1.1e-37 161.0 164 54.9
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 7.0e-37 158.3 227 43.2
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.0e-35 154.5 173 53.8
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 1.3e-35 154.1 141 55.3
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.7e-35 153.7 238 42.0
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 4.2e-34 149.1 237 40.1
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 5.5e-34 148.7 233 40.3
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 7.2e-34 148.3 219 42.9
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 6.3e-30 135.2 127 55.9
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 4.1e-29 132.5 223 38.6
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 5.9e-28 128.6 225 36.4
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 3.6e-25 119.4 118 54.2
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 5.2e-24 115.5 118 52.5
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 3.1e-21 106.3 95 58.9
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 1.6e-20 104.0 95 58.9
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 6.6e-19 98.6 215 38.6
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 1.6e-17 94.0 245 33.5
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.8e-16 90.5 245 31.4
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 3.4e-15 86.3 54 74.1
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 5.7e-15 85.5 244 32.0
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 1.7e-14 84.0 121 46.3
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 2.0e-12 77.0 99 45.5
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 8.6e-11 71.6 89 48.3
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 1.1e-10 71.2 49 69.4
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 8.9e-08 61.6 76 39.5
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 1.3e-06 57.8 84 36.9


User provided reference genes

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