Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.3e-234 814.7 422 100.0
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 6.2e-164 581.3 363 85.4
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 4.0e-139 498.8 367 75.2
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 4.0e-139 498.8 367 74.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.0e-139 497.7 366 75.4
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 7.6e-138 494.6 362 74.9
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.9e-137 492.7 367 73.3
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.9e-137 492.7 364 74.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 3.8e-137 492.3 366 74.9
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 3.8e-137 492.3 364 76.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 6.5e-137 491.5 362 74.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 6.5e-137 491.5 367 74.4
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 8.4e-137 491.1 367 74.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 4.2e-136 488.8 417 66.7
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 4.2e-136 488.8 417 66.7
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 7.1e-136 488.0 373 73.2
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 9.3e-136 487.6 366 74.3
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 9.3e-136 487.6 365 74.5
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 3.5e-135 485.7 370 73.8
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.0e-134 484.2 370 73.8
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.8e-134 483.4 362 73.2
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.0e-134 482.6 366 74.3
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 5.1e-134 481.9 345 77.1
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 8.7e-134 481.1 338 76.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.1e-133 480.7 315 78.7
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.1e-133 480.7 366 74.3
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 1.5e-133 480.3 368 73.4
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 3.3e-133 479.2 378 71.2
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.3e-133 479.2 336 76.2
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.6e-132 476.9 362 72.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 4.8e-132 475.3 361 72.0
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 6.3e-132 474.9 305 80.7
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 6.3e-132 474.9 362 72.4
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.4e-131 473.8 318 79.2
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.4e-131 473.0 361 72.0
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.1e-131 472.6 363 73.0
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 4.1e-131 472.2 367 71.1
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.1e-131 472.2 347 73.8
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.9e-131 471.5 378 71.4
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 9.0e-131 471.1 307 80.1
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-130 470.7 318 78.3
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.0e-130 469.9 336 75.9
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 4.5e-130 468.8 310 77.4
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.0e-129 467.6 380 69.2
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 2.2e-129 466.5 368 71.2
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.2e-129 466.5 368 70.4
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.2e-129 466.5 362 70.4
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.8e-129 465.7 360 71.9
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.8e-129 465.7 364 70.9
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 3.8e-129 465.7 364 71.7
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 5.0e-129 465.3 364 71.7
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 5.0e-129 465.3 355 73.5
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 6.5e-129 464.9 358 72.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 6.5e-129 464.9 374 71.1
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.4e-128 463.8 367 69.2
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.4e-128 463.8 367 69.2
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.4e-128 463.8 361 72.0
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.4e-128 463.8 364 70.9
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.9e-128 463.4 360 71.4
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.9e-128 463.4 307 78.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.5e-128 463.0 369 69.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 3.2e-128 462.6 363 70.0
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 5.5e-128 461.8 361 71.5
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.5e-128 461.8 361 71.5
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.5e-128 461.8 361 71.5
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 7.2e-128 461.5 362 69.3
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.7e-127 459.5 364 70.1
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.7e-127 459.5 368 69.6
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.7e-127 459.5 369 71.5
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.6e-127 459.1 364 70.1
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.6e-127 458.8 363 71.3
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.3e-126 456.4 280 83.9
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 3.9e-126 455.7 367 67.3
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 6.7e-126 454.9 303 79.2
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 8.8e-126 454.5 371 69.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.1e-125 454.1 344 73.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.5e-125 453.8 375 67.5
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-125 453.4 365 69.3
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 4.3e-125 452.2 365 69.3
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 5.7e-125 451.8 362 68.0
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 7.4e-125 451.4 364 69.2
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.4e-125 451.4 274 83.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-124 449.9 371 69.0
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.2e-124 449.9 375 66.7
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.8e-124 449.5 363 68.9
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.7e-124 449.1 365 68.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.7e-124 449.1 310 76.8
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 4.8e-124 448.7 310 78.1
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.8e-124 448.7 365 68.8
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.1e-123 447.6 361 71.2
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.1e-123 447.6 365 67.1
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.1e-123 447.6 367 69.8
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.4e-123 446.4 379 67.3
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.4e-123 446.4 379 67.3
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 3.1e-123 446.0 363 67.5
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 4.1e-123 445.7 365 67.7
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 4.1e-123 445.7 365 70.7
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 9.1e-123 444.5 367 66.2
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.5e-122 443.7 312 76.9
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.5e-122 443.7 258 87.6
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.5e-122 443.7 265 84.9
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 2.0e-122 443.4 363 69.4
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.4e-122 442.6 297 75.1
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 3.4e-122 442.6 361 68.1
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 4.5e-122 442.2 359 68.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.0e-121 441.0 362 69.3
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.8e-121 439.1 366 67.5
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.4e-120 437.2 336 69.9
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.4e-120 437.2 299 76.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 2.5e-120 436.4 383 67.4
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.5e-120 435.3 384 63.5
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 7.2e-120 434.9 286 79.0
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.6e-119 433.7 299 76.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 2.1e-119 433.3 356 68.0
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.7e-119 432.2 317 72.2
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.4e-118 430.6 388 61.6
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 5.1e-118 428.7 245 90.2
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.8e-116 422.2 283 78.8
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-114 417.2 282 77.7
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 7.7e-114 414.8 340 68.8
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.0e-113 414.5 305 72.1
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.9e-112 410.2 400 59.5
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.6e-111 407.1 300 72.7
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.1e-111 406.8 392 60.2
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.7e-108 397.1 365 64.1
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.8e-108 396.4 225 88.9
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 8.2e-108 394.8 274 73.7
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 4.1e-107 392.5 300 68.7
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 2.0e-106 390.2 272 75.4
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 5.9e-106 388.7 266 74.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.2e-105 386.7 248 79.0
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.2e-105 386.7 244 79.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.8e-105 386.0 249 77.9
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.5e-104 382.1 247 78.1
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 8.0e-103 378.3 243 77.4
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 8.8e-94 348.2 244 70.9
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 3.4e-93 346.3 367 58.0
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 5.4e-91 339.0 302 64.9
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 8.6e-89 331.6 246 70.7
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 5.5e-88 328.9 271 63.5
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 5.5e-88 328.9 308 63.0
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.2e-66 258.1 258 58.5
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 5.8e-61 239.2 156 78.2
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.2e-60 237.3 159 76.7
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 8.6e-57 225.3 175 67.4
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.9e-56 224.2 165 70.3
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 5.6e-48 196.1 107 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.2e-36 157.5 102 78.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.8e-36 156.8 99 79.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.1e-32 145.2 115 67.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.5e-32 144.1 120 65.8
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.3e-25 121.7 102 69.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.1e-19 102.1 64 84.4
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.4e-19 101.7 61 83.6


User provided reference genes

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