Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 2.9e-238 828.2 422 100.0
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.0e-198 696.8 418 82.1
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 1.5e-189 666.4 441 76.4
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.2e-188 663.3 445 75.5
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 2.6e-186 655.6 417 77.9
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 3.4e-186 655.2 414 77.8
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 1.3e-185 653.3 412 77.9
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 4.9e-185 651.4 412 77.2
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.1e-184 648.3 412 78.6
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 1.6e-183 646.4 417 77.0
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.0e-182 643.7 415 76.6
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.3e-182 643.3 417 77.0
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.1e-181 640.2 408 77.9
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.3e-181 638.3 415 76.4
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 2.8e-180 635.6 422 74.6
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 3.6e-180 635.2 424 74.8
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 8.1e-180 634.0 422 74.6
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 3.1e-179 632.1 422 74.6
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 4.0e-179 631.7 496 65.9
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 6.8e-179 630.9 414 75.4
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 2.6e-178 629.0 411 75.7
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 7.5e-178 627.5 431 73.8
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 7.5e-178 627.5 414 74.4
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.3e-177 626.7 420 74.8
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.7e-177 626.3 415 74.7
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 2.2e-177 625.9 417 74.1
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 2.4e-176 622.5 417 73.9
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 4.1e-176 621.7 413 74.3
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 5.4e-176 621.3 417 72.9
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.1e-176 620.9 414 74.4
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 9.2e-176 620.5 417 74.6
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 6.0e-175 617.8 415 73.3
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 7.8e-175 617.5 415 72.8
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 3.3e-173 612.1 410 72.4
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 5.6e-173 611.3 410 72.2
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 3.1e-171 605.5 411 71.3
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.5e-170 603.2 407 73.5
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 4.4e-170 601.7 411 69.8
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 2.2e-169 599.4 416 71.4
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 2.9e-169 599.0 417 71.0
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 4.9e-169 598.2 413 73.4
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 6.4e-169 597.8 422 69.9
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.1e-168 597.0 417 71.0
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.1e-168 597.0 461 67.5
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 1.4e-168 596.7 422 69.9
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.6e-167 593.2 410 71.0
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 7.8e-167 590.9 414 70.8
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 5.1e-166 588.2 378 77.8
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 5.1e-166 588.2 424 69.8
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 5.1e-166 588.2 420 68.6
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 2.1e-164 582.8 363 78.8
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 3.1e-163 578.9 411 68.4
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 9.0e-163 577.4 413 71.9
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.6e-162 575.9 414 70.0
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 3.4e-162 575.5 420 67.1
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.8e-162 574.7 414 70.0
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.7e-161 573.2 487 61.4
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 3.8e-161 572.0 422 68.0
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 4.9e-161 571.6 362 78.2
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.9e-161 571.6 400 68.5
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.1e-158 561.6 406 68.0
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 5.3e-155 551.6 436 64.2
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 9.0e-155 550.8 405 66.9
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 5.8e-154 548.1 418 67.2
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 2.7e-151 539.3 427 63.0
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.4e-147 526.9 449 60.6
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.9e-145 519.2 411 64.5
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.4e-144 516.9 351 72.6
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 1.6e-143 513.5 359 70.8
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.3e-142 509.6 350 73.4
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 6.7e-142 508.1 328 77.4
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 5.6e-141 505.0 354 71.5
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 3.7e-140 502.3 472 59.1
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.1e-133 480.7 436 58.0
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 4.2e-120 435.6 404 54.5
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.7e-119 432.2 297 70.7
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.8e-118 430.3 399 55.9
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.1e-117 427.6 279 76.7
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 4.8e-116 422.2 276 74.3
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 2.9e-113 412.9 276 73.6
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 8.5e-113 411.4 425 49.4
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 5.5e-112 408.7 277 72.6
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-109 400.2 422 47.6
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 5.7e-109 398.7 405 51.4
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.5e-101 374.0 413 48.4
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.6e-101 373.2 415 46.0
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 7.2e-96 355.1 276 63.8
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 3.1e-91 339.7 315 56.2
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 1.5e-88 330.9 269 63.6
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.9e-88 330.5 554 38.1
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.0e-86 324.7 423 41.8
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-86 323.9 414 42.8
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.0e-85 320.5 294 59.5
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 7.5e-85 318.5 261 61.7
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.2e-84 317.0 409 44.0
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 2.2e-84 317.0 446 39.7
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.3e-84 315.5 429 40.3
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.5e-82 309.3 418 40.7
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 2.9e-81 306.6 420 41.0
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.7e-76 289.7 422 40.0
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 1.4e-75 287.7 187 76.5
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.3e-70 270.4 190 70.5
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.0e-65 255.0 427 36.5
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 3.7e-60 236.5 369 38.2
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 4.3e-56 223.0 143 76.2
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.2e-55 221.5 381 35.7
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-55 221.1 164 68.9
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.8e-54 217.6 438 34.5
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.2e-53 214.9 201 59.2
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 1.4e-51 208.0 390 34.6
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 4.7e-47 193.0 254 45.3
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 9.0e-46 188.7 423 31.4
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.0e-45 187.6 322 35.7
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 6.6e-41 172.6 104 81.7
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 7.3e-40 169.1 263 41.1
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-39 168.3 232 47.4
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-38 165.2 315 35.2
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-37 161.0 125 60.8
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.4e-37 160.2 112 69.6
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 6.0e-34 149.4 143 58.0
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.0e-33 148.7 159 52.8
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.9e-32 144.4 271 36.5
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.5e-32 144.1 191 40.3
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-31 141.4 133 47.4
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-29 134.4 125 48.0
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 7.6e-29 132.5 85 77.6
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-28 131.7 146 49.3
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-27 128.6 401 26.2
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 5.6e-24 116.3 76 75.0
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.6e-24 116.3 227 32.6
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.0e-20 105.5 55 83.6
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.5e-19 99.8 169 35.5
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.9e-17 93.6 104 41.3
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-16 92.0 77 53.2
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.5e-16 91.7 80 53.8
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 8.5e-12 75.9 261 26.8
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 8.8e-09 65.9 71 56.3
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 8.8e-09 65.9 53 62.3
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.4e-06 58.5 47 59.6


User provided reference genes

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