Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 0.0e+00 2831.2 1690 100.0
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.3e-289 1000.7 1743 43.0
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.4e-275 954.1 1718 44.9
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.9e-272 943.7 1351 45.9
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.8e-230 804.3 1714 36.2
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 3.8e-220 770.0 1710 36.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 3.5e-218 763.5 1184 42.7
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 3.3e-216 756.9 1711 38.5
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 4.5e-205 719.9 1248 39.7
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.7e-199 700.3 1240 40.0
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.1e-198 698.7 1327 37.8
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.9e-196 690.6 1701 40.9
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.2e-191 672.5 1209 39.5
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.1e-190 672.2 1210 39.3
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 7.7e-189 666.0 1207 39.1
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 3.9e-185 653.7 1113 40.1
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 1.3e-183 648.7 1116 41.8
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 9.1e-182 642.5 1112 41.6
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.7e-177 626.3 1142 38.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 5.9e-173 613.2 873 44.4
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 8.8e-169 599.4 1719 32.4
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 5.3e-166 590.1 1720 30.8
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.2e-159 568.2 1718 30.0
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 8.3e-159 566.2 1711 30.2
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 2.0e-157 561.6 1702 33.0
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.5e-157 560.8 865 41.7
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.9e-156 557.8 1277 35.5
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 5.0e-156 557.0 1093 37.9
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.5e-156 556.6 1703 35.1
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 6.5e-156 556.6 862 41.3
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 9.5e-155 552.7 1733 31.4
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.6e-154 552.0 920 41.8
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 3.4e-152 544.3 1181 35.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 8.3e-151 539.7 1370 35.5
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.6e-149 535.4 1035 37.2
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 5.9e-149 533.5 890 40.0
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.6e-148 529.6 1035 37.1
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-146 525.8 1032 36.9
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.2e-142 511.1 1702 32.1
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 2.5e-139 501.5 1246 33.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 9.8e-136 489.6 1044 36.2
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.0e-132 479.6 1424 32.7
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 4.3e-131 474.2 1177 32.7
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.6e-130 472.2 726 42.0
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.0e-128 465.3 1173 33.3
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.2e-125 456.1 1192 32.0
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 7.8e-125 453.4 1221 32.5
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 7.8e-125 453.4 1430 32.6
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 7.8e-125 453.4 1691 29.3
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.3e-124 452.6 1183 32.5
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 4.3e-123 447.6 1185 33.5
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.2e-120 439.5 1289 30.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 8.4e-119 433.3 1166 32.3
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 5.4e-118 430.6 1189 32.4
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.2e-117 429.5 1373 31.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.7e-117 428.3 1420 30.8
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 4.3e-115 421.0 1195 32.5
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 3.6e-114 417.9 1085 33.1
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 8.1e-114 416.8 1036 32.5
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.4e-113 416.0 986 34.4
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 6.9e-113 413.7 1204 32.9
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.9e-111 408.3 1190 31.8
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 8.4e-111 406.8 1079 31.8
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 4.2e-110 404.4 912 34.9
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 4.8e-106 391.0 1023 33.1
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.4e-105 388.7 1136 30.9
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 5.3e-105 387.5 1166 31.3
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.5e-104 386.0 986 31.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 9.9e-104 383.3 1165 31.5
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.4e-102 379.4 826 35.6
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.3e-100 372.9 1146 30.1
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 8.7e-100 370.2 1733 27.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-99 369.8 1105 30.6
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 4.9e-95 354.4 1432 28.2
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.4e-94 352.8 1280 27.7
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 7.1e-94 350.5 1307 28.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.6e-93 349.4 1429 28.4
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-92 346.7 1130 30.2
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.3e-92 346.3 1303 28.6
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 5.1e-92 344.4 805 32.2
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 6.7e-92 344.0 1166 30.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.1e-89 336.7 1166 30.0
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 3.1e-89 335.1 1439 27.7
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.9e-87 328.6 1283 27.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 4.9e-87 327.8 1598 26.0
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 8.4e-87 327.0 1431 28.0
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.9e-86 325.9 1143 27.5
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 2.5e-86 325.5 974 30.5
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 3.9e-84 318.2 1091 29.2
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.8e-82 312.0 821 32.0
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 2.0e-80 305.8 1123 28.8
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.1e-77 295.8 1129 28.1
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 3.6e-77 295.0 868 30.3
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 5.1e-76 291.2 1827 28.7
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 3.7e-74 285.0 1156 27.1
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 6.3e-74 284.3 1759 24.7
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.1e-73 283.5 1119 27.3
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 3.2e-70 271.9 1689 25.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.8e-68 263.8 1157 26.1
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 8.8e-68 263.8 1312 26.4
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 8.2e-66 257.3 1703 25.5
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 7.0e-65 254.2 670 32.7
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 5.5e-62 244.6 1190 25.3
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.6e-61 243.0 1727 22.9
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.6e-61 243.0 892 31.4
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 3.8e-55 221.9 238 50.0
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-54 219.2 431 36.2
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.2e-54 218.8 431 36.2
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.2e-54 218.8 431 36.2
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 2.3e-52 212.6 891 27.7
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.1e-49 203.8 512 33.8
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 2.5e-38 166.0 1159 23.9
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.3e-36 159.5 384 30.5
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 5.2e-36 158.3 460 28.5
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 8.9e-36 157.5 282 37.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.8e-33 149.8 335 36.1
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 5.4e-33 148.3 332 36.4
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 4.5e-32 145.2 152 47.4
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 5.9e-32 144.8 298 33.6
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.6e-30 138.3 1244 32.6
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 4.7e-29 135.2 332 33.7
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 2.3e-28 132.9 138 55.1
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.1e-25 122.1 388 27.3
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.0e-25 121.3 126 53.2
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 3.0e-23 115.9 317 28.4
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 8.6e-23 114.4 126 51.6
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.1e-22 114.0 136 50.7
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 9.5e-22 110.9 271 32.8
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 6.2e-21 108.2 487 28.3
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.1e-20 107.5 261 32.6
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.1e-20 105.9 136 43.4
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 9.8e-19 100.9 115 49.6
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.3e-18 97.8 156 36.5
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 6.0e-16 91.7 139 42.4
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.5e-14 87.0 122 41.8
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 3.3e-14 85.9 117 44.4
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 4.3e-14 85.5 106 43.4
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 2.8e-13 82.8 122 40.2
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 6.8e-12 78.2 207 30.0
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.1e-09 70.9 137 31.4
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 2.4e-09 69.7 129 38.8
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 4.1e-09 68.9 91 46.2
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 9.2e-09 67.8 133 36.1
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 9.2e-09 67.8 88 43.2
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 1.2e-08 67.4 403 27.0
MELO3C033939.2 Cucumis melo HOM05D018160 ORTHO05D034961 8.6e-07 61.2 60 51.7
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 9.5e-06 57.8 85 35.3


User provided reference genes

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