Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.8e-269 931.4 483 100.0
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.6e-136 490.3 487 58.7
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 3.9e-61 240.0 488 40.6
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 8.6e-61 238.8 491 38.9
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.9e-60 237.7 489 38.9
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 2.5e-60 237.3 487 40.9
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.9e-55 221.1 493 36.9
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.5e-44 184.9 495 36.2
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 4.6e-38 163.3 476 34.9
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.8e-37 161.4 540 33.5
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.5e-36 158.3 490 32.9
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.1e-34 150.6 476 35.1
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 5.3e-34 149.8 498 33.3
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 2.0e-33 147.9 510 33.3
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.3e-32 145.2 479 33.0
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.9e-32 144.1 518 29.5
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 8.4e-32 142.5 493 31.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.7e-30 137.5 378 35.4
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.8e-29 134.8 487 30.0
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.1e-28 132.1 496 30.0
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 2.5e-28 131.0 492 30.1
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.3e-27 128.6 503 32.8
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.1e-26 125.6 494 29.4
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.4e-26 125.2 504 31.2
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.4e-26 125.2 490 33.3
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.8e-26 124.8 499 31.3
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 3.1e-26 124.0 469 29.6
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.1e-26 124.0 500 31.6
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 5.3e-26 123.2 486 30.9
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 5.8e-25 119.8 502 30.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 5.8e-25 119.8 501 31.5
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 7.6e-25 119.4 501 31.5
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-24 119.0 489 29.9
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.7e-24 118.2 527 29.0
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.8e-24 117.1 497 30.2
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.9e-23 114.8 482 28.8
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.5e-23 114.4 501 30.1
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.2e-23 114.0 483 31.3
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 5.5e-23 113.2 349 31.2
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 7.1e-23 112.8 344 32.8
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 7.1e-23 112.8 531 30.3
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 9.3e-23 112.5 500 29.4
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 2.7e-22 110.9 482 27.0
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 6.1e-22 109.8 481 27.7
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 7.9e-22 109.4 504 27.0
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-21 107.8 483 28.0
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 2.3e-21 107.8 481 27.4
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 3.0e-21 107.5 487 27.9
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 3.0e-21 107.5 487 27.9
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 5.1e-21 106.7 354 29.9
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 8.7e-21 105.9 489 28.0
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-20 104.8 481 28.3
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 3.3e-20 104.0 475 27.6
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.3e-20 104.0 487 28.3
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 7.4e-20 102.8 483 27.7
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 7.4e-20 102.8 487 27.7
Manes.07G013050 Manihot esculenta HOM05D002709 ORTHO05D002914 2.2e-19 101.3 172 44.8
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 2.2e-19 101.3 484 28.1
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.8e-19 100.9 505 30.1
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-18 97.8 485 28.0
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.4e-18 97.8 355 32.4
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 4.1e-18 97.1 347 29.7
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 5.3e-18 96.7 495 25.7
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 5.3e-18 96.7 363 30.6
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.9e-18 96.3 489 25.8
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 6.9e-18 96.3 512 27.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 9.0e-18 95.9 479 27.3
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 3.4e-17 94.0 486 28.6
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 4.5e-17 93.6 261 33.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 5.9e-17 93.2 489 27.2
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 5.9e-17 93.2 489 27.4
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.7e-17 92.8 199 38.2
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.7e-16 91.7 324 31.2
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 1.7e-16 91.7 482 28.0
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-16 91.3 487 26.9
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 3.8e-16 90.5 500 25.6
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 5.0e-16 90.1 509 25.7
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 5.0e-16 90.1 487 29.2
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 6.5e-16 89.7 501 25.9
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 8.5e-16 89.4 491 25.1
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 1.1e-15 89.0 493 26.0
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 3.2e-15 87.4 481 28.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 5.5e-15 86.7 557 26.0
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 1.2e-14 85.5 503 27.2
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 3.6e-14 84.0 478 27.2
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.9e-14 82.8 374 29.7
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 7.9e-14 82.8 481 27.7
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 7.9e-14 82.8 479 26.7
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.0e-13 82.4 609 25.1
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.4e-13 82.0 477 26.0
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.8e-13 81.6 522 23.8
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.3e-13 81.3 64 62.5
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 3.0e-13 80.9 196 35.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 3.0e-13 80.9 482 26.1
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.0e-13 80.9 192 36.5
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.9e-13 80.5 482 26.1
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.9e-13 80.5 185 35.1
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 6.7e-13 79.7 191 35.1
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 8.8e-13 79.3 362 28.5
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.1e-12 79.0 190 36.8
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 2.0e-12 78.2 496 24.4
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.0e-12 78.2 476 25.6
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 2.5e-12 77.8 582 25.1
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.5e-12 77.8 196 33.2
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 3.3e-12 77.4 487 24.4
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 3.3e-12 77.4 481 26.0
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 3.3e-12 77.4 487 24.4
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 7.4e-12 76.3 478 27.4
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.3e-11 75.5 490 26.7
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 1.3e-11 75.5 190 36.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.7e-11 75.1 478 26.2
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 2.8e-11 74.3 305 28.5
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.8e-11 74.3 195 30.8
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 3.7e-11 73.9 197 33.0
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 3.7e-11 73.9 199 32.7
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 6.3e-11 73.2 187 34.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 8.2e-11 72.8 193 32.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 8.2e-11 72.8 488 24.8
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 1.1e-10 72.4 186 33.3
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.4e-10 72.0 57 61.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.4e-10 72.0 492 25.8
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 3.1e-10 70.9 69 58.0
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.1e-10 70.9 484 23.6
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 3.1e-10 70.9 204 30.9
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-10 70.5 203 33.5
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.1e-10 70.5 345 26.7
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 5.3e-10 70.1 197 32.5
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 5.3e-10 70.1 199 32.7
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 6.9e-10 69.7 307 29.0
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 6.9e-10 69.7 199 32.7
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 9.1e-10 69.3 213 32.4
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-09 68.9 214 31.8
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-09 68.9 307 27.7
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 1.5e-09 68.6 504 25.4
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.0e-09 68.2 565 24.1
RcHm_v2.0_Chr2g0145901 Rosa chinensis HOM05D004305 ORTHO05D035653 2.6e-09 67.8 216 33.3
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-09 67.4 481 23.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-09 67.4 200 32.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-09 67.4 307 27.4
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-09 67.4 198 31.8
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-09 67.4 481 23.9
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-09 67.4 200 32.0
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.4e-09 67.4 69 52.2
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.3e-08 65.5 200 31.5
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 1.3e-08 65.5 200 32.5
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.7e-08 65.1 188 33.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-08 65.1 200 32.5
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.9e-08 64.3 198 29.8
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 5.0e-08 63.5 189 29.1
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.9e-07 61.6 486 25.5
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 5.5e-07 60.1 54 61.1
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.2e-06 58.9 478 26.4
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 2.1e-06 58.2 191 30.4
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 7.9e-06 56.2 305 25.6


User provided reference genes

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