Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 8.8e-246 853.2 438 100.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 3.5e-226 788.1 432 91.4
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.5e-226 788.1 432 91.7
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.7e-225 785.8 432 91.7
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.8e-225 784.6 432 91.4
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.6e-223 779.2 432 90.0
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 4.7e-223 777.7 432 89.8
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 6.1e-223 777.3 432 89.8
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 1.0e-222 776.5 432 89.4
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.8e-222 775.8 432 89.6
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 5.2e-222 774.2 432 89.4
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 8.8e-222 773.5 432 89.4
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.5e-221 772.7 432 90.3
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.5e-221 772.7 432 89.4
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.5e-221 772.7 432 88.9
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.6e-221 771.9 428 90.0
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 3.4e-221 771.5 432 89.4
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.4e-219 766.1 432 88.4
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.4e-219 765.4 432 87.7
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 2.4e-219 765.4 432 88.7
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.1e-219 763.5 430 88.4
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 9.1e-219 763.5 432 87.5
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.2e-218 763.1 429 88.3
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.5e-218 761.5 432 88.0
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.5e-218 761.5 432 87.7
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 5.9e-218 760.8 434 87.3
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 7.7e-218 760.4 432 88.0
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.3e-217 759.6 431 87.9
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 5.0e-217 757.7 432 87.0
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 6.6e-217 757.3 432 86.8
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 8.6e-217 756.9 437 85.8
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 8.6e-217 756.9 432 86.6
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.1e-216 756.5 437 86.5
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.5e-216 756.1 432 88.0
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.9e-216 755.7 432 86.6
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.9e-216 755.7 432 88.0
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.5e-216 755.4 432 87.7
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 2.5e-216 755.4 432 87.3
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 3.3e-216 755.0 432 87.5
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 3.3e-216 755.0 434 86.4
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.2e-216 754.6 432 86.1
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 4.2e-216 754.6 432 86.6
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 4.2e-216 754.6 432 86.6
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 9.5e-216 753.4 446 86.1
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-215 753.1 432 86.3
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.2e-215 753.1 432 86.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.1e-215 752.3 432 86.3
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.1e-215 752.3 432 86.3
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.1e-215 752.3 432 86.6
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.8e-215 751.9 432 86.3
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 4.7e-215 751.1 432 86.8
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 8.0e-215 750.4 433 87.3
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 8.0e-215 750.4 432 86.8
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.4e-214 749.6 432 86.3
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.4e-214 749.6 432 86.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-214 749.2 432 86.1
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.8e-214 749.2 432 85.9
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.8e-214 749.2 432 85.9
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.8e-214 749.2 432 86.1
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 2.3e-214 748.8 432 86.1
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.3e-214 748.8 432 85.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 3.0e-214 748.4 432 85.9
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 4.0e-214 748.0 432 86.6
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 4.0e-214 748.0 432 87.0
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 5.2e-214 747.7 432 86.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.2e-214 747.7 430 87.2
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 5.2e-214 747.7 432 85.6
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 6.8e-214 747.3 432 85.6
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 6.8e-214 747.3 432 85.4
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 6.8e-214 747.3 432 86.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 8.9e-214 746.9 432 85.4
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.5e-213 746.1 432 86.3
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.5e-213 746.1 432 86.1
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 3.4e-213 745.0 432 85.2
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 3.4e-213 745.0 432 85.2
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.3e-212 743.0 436 84.6
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.7e-212 742.7 432 85.9
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 6.3e-212 740.7 436 84.2
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 6.3e-212 740.7 431 85.8
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 8.3e-212 740.3 432 84.7
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.1e-211 740.0 424 87.3
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 3.1e-211 738.4 432 85.2
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.1e-211 738.0 432 83.8
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 4.1e-211 738.0 432 86.8
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 5.4e-211 737.6 436 84.2
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 7.0e-211 737.3 436 84.6
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.0e-211 737.3 422 86.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 7.0e-211 737.3 433 84.5
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.6e-210 736.1 436 83.5
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.7e-210 735.3 436 83.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 5.9e-210 734.2 436 83.5
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 7.8e-210 733.8 432 83.8
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.8e-209 731.5 432 86.3
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 5.0e-209 731.1 432 83.1
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 5.0e-209 731.1 432 83.3
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 8.6e-209 730.3 436 82.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.5e-208 728.8 432 82.9
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 3.3e-208 728.4 431 84.0
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.3e-208 728.0 427 83.6
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.8e-207 725.3 463 79.9
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 6.1e-207 724.2 432 85.2
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 3.1e-206 721.8 431 83.3
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 3.1e-206 721.8 435 82.1
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.5e-205 719.5 432 82.6
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.5e-205 719.5 432 82.9
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 4.4e-205 718.0 431 82.4
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.3e-204 716.5 432 83.3
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.2e-204 715.7 432 83.8
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.3e-204 713.8 432 82.9
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.9e-203 712.6 434 80.9
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.0e-202 709.1 432 80.8
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.0e-201 705.3 432 82.2
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.5e-200 703.0 445 79.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.1e-198 695.3 405 85.2
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 5.8e-197 691.0 430 78.8
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.3e-192 674.1 383 86.7
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.8e-191 672.2 432 79.6
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.9e-184 649.4 432 73.1
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.0e-181 639.4 433 73.7
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 6.4e-180 634.4 434 72.6
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.3e-177 625.9 427 73.8
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 8.7e-177 624.0 465 69.0
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.4e-174 616.7 430 71.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 6.0e-170 601.3 426 70.4
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.1e-167 592.8 346 84.4
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.8e-167 591.7 470 68.9
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.9e-163 579.7 426 68.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.3e-158 561.6 318 88.1
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.3e-156 557.0 427 67.7
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.0e-153 547.4 315 86.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.0e-121 441.0 269 83.6
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 5.3e-118 428.7 257 84.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.2e-117 427.6 442 50.7
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.5e-117 425.6 330 67.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.3e-116 424.1 257 81.7
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.4e-112 409.5 258 78.7
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 4.4e-112 409.1 232 85.8
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 9.2e-94 348.2 202 86.6
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 3.9e-92 342.8 201 86.1
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.3e-91 339.7 398 53.3
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.7e-87 327.4 175 93.7
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 4.7e-82 309.3 180 83.9
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.5e-75 287.0 182 78.0
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.3e-75 286.6 218 70.2
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 7.1e-70 268.9 424 40.1
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 3.1e-65 253.4 216 63.4
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 3.4e-64 250.0 216 63.4
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 7.6e-64 248.8 220 61.4
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.3e-63 248.1 295 46.1
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 5.4e-62 242.7 238 58.0
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 2.8e-58 230.3 218 57.8
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 4.4e-56 223.0 123 88.6
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.3e-51 206.5 116 87.1
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 2.1e-42 177.6 188 55.3
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-39 167.2 88 93.2
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 6.0e-37 159.5 84 91.7
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 3.1e-33 147.1 154 54.5
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 7.4e-27 125.9 135 57.0
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.2e-26 124.4 133 43.6
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.7e-23 114.8 74 74.3
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.4e-22 111.7 67 82.1
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 7.2e-22 109.4 125 51.2
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.2e-21 108.6 205 40.0
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 2.0e-19 101.3 75 66.7
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 6.3e-18 96.3 57 86.0
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.2e-15 87.8 57 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.9e-15 87.4 66 68.2
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 5.5e-14 83.2 48 85.4
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 6.1e-13 79.7 208 32.7
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 7.4e-11 72.8 48 75.0
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 7.4e-11 72.8 46 78.3
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 3.7e-10 70.5 72 61.1
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 4.8e-10 70.1 69 58.0
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 4.5e-08 63.5 37 83.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 5.9e-08 63.2 58 60.3
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 3.8e-07 60.5 52 67.3
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 2.5e-06 57.8 31 80.6


User provided reference genes

Program Settings