Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.2e-36 156.0 78 100.0
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 7.0e-29 130.2 78 82.1
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 2.7e-28 128.3 78 80.8
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.5e-28 127.5 78 82.1
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 2.2e-27 125.2 78 78.2
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.8e-27 124.4 79 81.0
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.1e-26 122.9 78 74.4
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.5e-26 122.5 77 75.3
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.5e-26 122.5 78 78.2
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.5e-26 122.5 78 73.1
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.5e-26 122.5 80 76.2
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.5e-26 121.7 78 76.9
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 2.5e-26 121.7 78 78.2
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.2e-25 119.4 78 76.9
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.2e-25 119.4 78 76.9
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 2.7e-25 118.2 72 80.6
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.7e-25 118.2 80 72.5
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.7e-25 118.2 80 75.0
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 3.6e-25 117.9 78 74.4
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 4.7e-25 117.5 78 78.2
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 4.7e-25 117.5 78 75.6
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 8.0e-25 116.7 73 82.2
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 8.0e-25 116.7 69 78.3
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 8.0e-25 116.7 77 75.3
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 8.0e-25 116.7 80 72.5
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.8e-24 115.5 77 71.4
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.8e-24 115.5 77 75.3
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 3.0e-24 114.8 78 74.4
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.0e-24 114.4 65 84.6
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 8.8e-24 113.2 71 76.1
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 2.0e-23 112.1 71 77.5
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 3.4e-23 111.3 64 82.8
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.4e-23 111.3 68 82.4
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 3.4e-23 111.3 68 77.9
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 4.4e-23 110.9 68 77.9
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 5.7e-23 110.5 78 71.8
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 7.5e-23 110.2 78 69.2
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.3e-22 109.4 64 81.2
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.3e-22 109.4 68 80.9
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.7e-22 109.0 78 70.5
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.7e-22 109.0 78 70.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 2.2e-22 108.6 68 75.0
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 2.8e-22 108.2 78 70.5
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 2.8e-22 108.2 75 70.7
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 3.7e-22 107.8 77 68.8
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 4.9e-22 107.5 78 69.2
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 6.3e-22 107.1 78 69.2
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 8.3e-22 106.7 72 70.8
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.4e-21 105.9 68 73.5
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 1.4e-21 105.9 77 67.5
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 2.4e-21 105.1 72 73.6
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 3.1e-21 104.8 78 69.2
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.1e-21 104.8 64 75.0
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 5.4e-21 104.0 68 75.0
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 7.0e-21 103.6 78 64.1
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.0e-20 102.1 66 81.8
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 2.7e-20 101.7 68 73.5
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.5e-20 101.3 70 74.3
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 5.9e-20 100.5 72 68.1
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 7.7e-20 100.1 63 74.6
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 7.7e-20 100.1 68 73.5
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.0e-19 99.8 73 69.9
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.3e-19 99.4 61 77.0
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 1.3e-19 99.4 68 69.1
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.7e-19 99.0 67 73.1
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 1.7e-19 99.0 68 69.1
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 2.3e-19 98.6 81 64.2
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.8e-19 97.8 67 73.1
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 6.6e-19 97.1 74 60.8
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 8.6e-19 96.7 72 65.3
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 1.9e-18 95.5 78 62.8
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.9e-18 95.5 71 64.8
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.9e-18 95.5 54 81.5
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 2.5e-18 95.1 67 70.1
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 3.3e-18 94.7 69 66.7
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 3.3e-18 94.7 69 66.7
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 3.3e-18 94.7 68 70.6
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 5.5e-18 94.0 77 58.4
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 7.2e-18 93.6 55 80.0
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 9.5e-18 93.2 68 67.6
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.2e-17 92.8 75 60.0
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.2e-17 92.8 75 60.0
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.2e-17 92.8 75 60.0
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.1e-17 92.0 71 63.4
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 2.1e-17 92.0 75 60.0
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 2.1e-17 92.0 64 65.6
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 2.8e-17 91.7 81 60.5
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 2.8e-17 91.7 77 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.0e-16 89.7 63 66.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.3e-16 88.6 63 65.1
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 3.0e-16 88.2 68 67.6
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 3.0e-16 88.2 68 67.6
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 4.0e-16 87.8 65 63.1
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 4.0e-16 87.8 68 69.1
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 5.2e-16 87.4 68 63.2
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 3.4e-15 84.7 68 63.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 9.8e-15 83.2 70 62.9
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 7.8e-12 73.6 80 50.0
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 2.9e-11 71.6 90 47.8
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 6.6e-11 70.5 43 79.1
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 1.5e-10 69.3 45 73.3
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 2.0e-07 58.9 38 68.4
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.8e-07 57.4 30 90.0
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 8.3e-06 53.5 45 53.3


User provided reference genes

Program Settings