Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 6.0e-258 893.6 445 100.0
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 3.2e-219 765.0 445 86.5
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 8.8e-193 677.2 449 77.5
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 7.4e-192 674.1 445 78.0
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.5e-189 666.4 446 76.7
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.5e-189 664.8 443 76.5
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 2.2e-188 662.5 446 76.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.9e-188 662.1 451 73.6
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 8.5e-188 660.6 441 75.7
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.2e-187 658.7 443 76.1
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 7.2e-187 657.5 443 76.1
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.2e-187 657.5 443 76.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.9e-185 651.7 409 78.2
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-184 650.2 405 78.8
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-184 649.8 413 77.5
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.3e-183 646.7 442 75.1
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.4e-182 643.3 409 78.0
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.4e-182 642.5 430 75.1
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 3.1e-182 642.1 439 73.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 1.0e-180 637.1 406 76.8
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.7e-180 636.3 442 73.1
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 6.5e-180 634.4 408 76.7
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.1e-179 633.6 434 73.3
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.1e-178 629.4 413 74.8
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.7e-178 629.0 441 71.9
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.7e-178 628.2 454 71.8
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 8.0e-178 627.5 442 72.4
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.0e-177 627.1 444 71.4
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.0e-177 627.1 448 70.5
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.0e-177 627.1 448 71.7
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.3e-177 625.9 448 71.7
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.9e-177 625.2 454 71.8
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 3.9e-177 625.2 399 77.2
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.5e-176 623.2 454 71.6
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 2.2e-175 619.4 449 71.7
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.7e-175 618.6 415 73.0
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.1e-174 615.1 411 74.2
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 7.7e-173 610.9 452 68.6
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.0e-172 610.5 409 73.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.9e-171 606.3 447 67.8
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 4.2e-171 605.1 431 72.2
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 5.5e-171 604.7 446 69.3
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.6e-170 603.2 394 73.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.1e-170 601.3 391 74.4
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 8.0e-170 600.9 447 68.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 3.3e-168 595.5 430 67.7
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 5.7e-168 594.7 443 69.3
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 5.7e-168 594.7 401 74.3
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 9.7e-168 594.0 387 73.9
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 9.7e-168 594.0 408 71.3
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.2e-167 592.8 448 67.0
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 2.2e-167 592.8 411 71.3
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 3.7e-167 592.0 406 70.4
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 4.8e-167 591.7 414 70.0
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.4e-166 590.1 412 72.3
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.8e-166 589.7 445 67.9
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 3.1e-166 589.0 448 67.0
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 3.1e-166 589.0 389 73.5
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.3e-166 588.2 448 67.0
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 9.1e-166 587.4 404 71.0
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.2e-165 587.0 391 71.9
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 4.5e-165 585.1 449 67.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.0e-164 583.9 433 70.0
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.9e-164 582.4 449 65.5
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.8e-164 582.0 451 65.9
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 6.5e-164 581.3 398 73.6
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 4.2e-163 578.6 414 72.0
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 4.2e-163 578.6 411 72.3
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 5.5e-163 578.2 448 64.5
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 7.2e-163 577.8 429 69.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.6e-162 576.6 431 67.1
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.6e-162 576.6 450 66.2
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 2.1e-162 576.2 410 70.2
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 4.7e-162 575.1 416 71.4
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 6.1e-162 574.7 439 68.3
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.0e-161 573.9 442 69.0
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.3e-161 572.8 408 69.1
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.3e-161 572.8 447 66.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.0e-160 569.7 454 66.7
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 2.6e-160 569.3 407 69.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.6e-160 569.3 431 66.4
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 2.6e-160 569.3 407 69.3
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 7.5e-160 567.8 425 68.7
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.3e-159 567.0 431 66.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.7e-159 566.6 435 67.1
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.2e-159 566.2 425 66.8
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.2e-159 566.2 425 66.8
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 2.2e-159 566.2 494 63.0
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.8e-159 565.1 386 71.5
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.1e-158 563.9 408 69.4
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.6e-157 560.1 406 68.0
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 4.5e-157 558.5 405 68.4
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 4.5e-157 558.5 406 68.2
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 7.7e-157 557.8 392 69.6
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 7.7e-157 557.8 401 69.6
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 7.7e-157 557.8 421 68.2
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.3e-156 556.2 403 69.2
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.8e-156 555.4 407 68.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 6.6e-156 554.7 423 67.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 6.6e-156 554.7 348 78.4
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.5e-155 553.5 401 69.8
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 4.2e-155 552.0 418 68.7
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.6e-154 550.1 389 68.4
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.3e-151 540.4 410 66.1
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.3e-151 538.1 400 67.2
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 9.2e-150 534.3 422 64.7
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.6e-149 533.5 447 63.8
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-148 530.4 409 67.5
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 8.6e-148 527.7 309 82.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 2.5e-147 526.2 382 67.0
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 6.1e-146 521.5 392 66.3
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.2e-144 517.3 420 62.4
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 2.6e-144 516.2 411 62.5
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 7.5e-144 514.6 382 67.0
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.3e-143 513.8 390 65.4
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.7e-143 513.5 445 60.9
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.9e-142 510.0 385 66.8
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 9.2e-142 507.7 382 64.9
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.5e-141 505.8 432 60.0
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.0e-140 504.2 385 66.0
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.9e-140 502.3 404 62.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 4.3e-139 498.8 386 63.5
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 4.3e-139 498.8 348 72.4
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.6e-138 495.7 417 63.8
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.3e-137 493.0 334 71.6
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.5e-131 473.8 427 59.7
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 4.3e-131 472.2 390 59.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.4e-126 455.3 263 82.9
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.1e-124 448.7 391 59.3
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 7.8e-117 424.9 279 74.2
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.7e-108 397.1 282 70.9
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.0e-108 396.4 252 74.6
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.0e-108 396.4 248 75.4
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.9e-99 367.1 280 66.1
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 6.9e-97 358.6 394 50.0
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.3e-91 339.3 234 71.4
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 6.2e-90 335.5 397 46.6
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.4e-89 333.6 270 58.5
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.5e-88 330.9 420 45.2
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.5e-86 323.6 256 61.7
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 8.2e-74 282.0 172 79.1
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.8e-71 273.1 197 71.1
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.4e-67 259.6 296 47.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.5e-64 251.1 176 70.5
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.7e-58 231.1 204 61.3
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.1e-57 226.9 202 55.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.2e-52 209.5 204 56.4
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.2e-46 189.1 165 60.0
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 2.8e-42 177.2 118 75.4
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.1e-41 175.3 234 40.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-41 174.5 146 59.6
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 2.3e-39 167.5 240 45.8
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 4.4e-35 153.3 82 82.9
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-33 148.7 319 32.6
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 3.2e-33 147.1 181 47.5
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.9e-32 142.9 348 31.9
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 7.3e-30 136.0 247 36.4
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 9.8e-27 125.6 77 75.3
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.7e-26 124.8 383 27.9
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.6e-24 118.2 268 34.0
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-23 115.2 69 78.3
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-23 113.6 69 76.8
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.6e-23 112.8 69 76.8
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 3.1e-20 104.0 122 48.4
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.4e-19 100.5 146 37.0
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 3.4e-19 100.5 146 41.8
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 2.5e-14 84.3 89 49.4
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 4.3e-14 83.6 172 33.7
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.7e-10 71.6 67 47.8
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 8.4e-10 69.3 120 38.3
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.4e-09 67.8 38 78.9
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 7.3e-06 56.2 183 29.5


User provided reference genes

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