Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G046000 Manihot esculenta HOM05D003059 ORTHO05D003414 7.3e-26 119.8 60 100.0
Manes.06G111400 Manihot esculenta HOM05D003059 ORTHO05D003414 2.5e-18 94.7 52 94.2
Manes.14G059800 Manihot esculenta HOM05D003059 ORTHO05D003414 7.5e-15 83.2 52 80.8
Dinv38519 Davidia involucrata HOM05D003059 ORTHO05D003414 8.3e-14 79.7 52 75.0
Actinidia08963 Actinidia chinensis HOM05D003059 ORTHO05D003414 4.1e-13 77.4 52 75.0
Migut.D02025 Erythranthe guttata HOM05D003059 ORTHO05D003414 1.6e-12 75.5 52 71.2
CiPaw.11G018800 Carya illinoinensis HOM05D003059 ORTHO05D003414 2.7e-12 74.7 46 78.3
Migut.L00362 Erythranthe guttata HOM05D003059 ORTHO05D003414 3.5e-12 74.3 52 69.2
Migut.L00541 Erythranthe guttata HOM05D003059 ORTHO05D003414 3.5e-12 74.3 52 69.2
Sed0015834 Sechium edule HOM05D003059 ORTHO05D003414 3.5e-12 74.3 51 70.6
THA.LOC104824990 Tarenaya hassleriana HOM05D003059 ORTHO05D003414 4.6e-12 73.9 52 67.3
Actinidia08036 Actinidia chinensis HOM05D003059 ORTHO05D003414 6.0e-12 73.6 52 71.2
BcaB05g24060 Brassica carinata HOM05D003059 ORTHO05D003414 7.8e-12 73.2 53 69.8
TWI23G0536 Tripterygium wilfordii HOM05D003059 ORTHO05D003414 7.8e-12 73.2 51 70.6
TAR629G2355 Trochodendron aralioides HOM05D003059 ORTHO05D003414 7.8e-12 73.2 46 78.3
BcaB08g35384 Brassica carinata HOM05D003059 ORTHO05D003414 1.0e-11 72.8 53 69.8
ECA232G2306 Erigeron canadensis HOM05D003059 ORTHO05D003414 1.0e-11 72.8 51 70.6
Migut.O00256 Erythranthe guttata HOM05D003059 ORTHO05D003414 1.0e-11 72.8 52 69.2
TAR622G0418 Trochodendron aralioides HOM05D003059 ORTHO05D003414 1.0e-11 72.8 48 75.0
Cc04_g11370 Coffea canephora HOM05D003059 ORTHO05D003414 1.3e-11 72.4 52 67.3
Eucgr.B00213 Eucalyptus grandis HOM05D003059 ORTHO05D003414 1.3e-11 72.4 51 68.6
Haze_07597 Corylus avellana HOM05D003059 ORTHO05D003414 1.7e-11 72.0 49 69.4
Lj5A131T29 Lonicera japonica HOM05D003059 ORTHO05D003414 1.7e-11 72.0 49 71.4
BcaC09g49806 Brassica carinata HOM05D003059 ORTHO05D003414 2.3e-11 71.6 53 69.8
BraA01t02506Z Brassica rapa HOM05D003059 ORTHO05D003414 2.3e-11 71.6 53 69.8
MBI10_g32561_MAGBIO Magnolia biondii HOM05D003059 ORTHO05D003414 2.3e-11 71.6 52 69.2
Oeu036018.1 Olea europaea HOM05D003059 ORTHO05D003414 2.3e-11 71.6 52 63.5
Thecc.03G116100 Theobroma cacao HOM05D003059 ORTHO05D003414 2.3e-11 71.6 48 72.9
ATR0122G001 Amborella trichopoda HOM05D003059 ORTHO05D003414 3.0e-11 71.2 53 67.9
COL.COLO4_03771 Corchorus olitorius HOM05D003059 ORTHO05D003414 3.0e-11 71.2 48 72.9
Migut.O00169 Erythranthe guttata HOM05D003059 ORTHO05D003414 3.0e-11 71.2 52 65.4
Migut.O00170 Erythranthe guttata HOM05D003059 ORTHO05D003414 3.0e-11 71.2 52 65.4
Lj5C131T0 Lonicera japonica HOM05D003059 ORTHO05D003414 3.0e-11 71.2 48 72.9
Atru.chr9.2594 Acer truncatum HOM05D003059 ORTHO05D003414 3.9e-11 70.9 53 64.2
A01p25870 Brassica napus HOM05D003059 ORTHO05D003414 3.9e-11 70.9 53 69.8
Migut.O00168 Erythranthe guttata HOM05D003059 ORTHO05D003414 3.9e-11 70.9 51 66.7
QL10p006666 Quercus lobata HOM05D003059 ORTHO05D003414 3.9e-11 70.9 51 66.7
TAR371G0478 Trochodendron aralioides HOM05D003059 ORTHO05D003414 3.9e-11 70.9 48 70.8
A02p12840 Brassica napus HOM05D003059 ORTHO05D003414 5.1e-11 70.5 53 66.0
CSS0018467 Camellia sinensis var. sinensis HOM05D003059 ORTHO05D003414 5.1e-11 70.5 49 69.4
Gohir.A07G056100 Gossypium hirsutum HOM05D003059 ORTHO05D003414 5.1e-11 70.5 48 72.9
Gohir.D07G060400 Gossypium hirsutum HOM05D003059 ORTHO05D003414 5.1e-11 70.5 48 72.9
Gorai.001G064100 Gossypium raimondii HOM05D003059 ORTHO05D003414 5.1e-11 70.5 48 72.9
BcaB01g02912 Brassica carinata HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 67.9
BcaB05g23578 Brassica carinata HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 66.0
BcaC01g04825 Brassica carinata HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 67.9
BcaC04g20815 Brassica carinata HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 66.0
C03p33420 Brassica napus HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 67.9
C09p38850 Brassica napus HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 66.0
BolC9t56749H Brassica oleracea HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 66.0
BraSC37t46156Z Brassica rapa HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 66.0
ECA232G3817 Erigeron canadensis HOM05D003059 ORTHO05D003414 6.6e-11 70.1 51 72.5
Thhalv10014669m.g Eutrema salsugineum HOM05D003059 ORTHO05D003414 6.6e-11 70.1 53 66.0
A03p27710 Brassica napus HOM05D003059 ORTHO05D003414 8.6e-11 69.7 53 66.0
BraA02t06340Z Brassica rapa HOM05D003059 ORTHO05D003414 8.6e-11 69.7 52 67.3
Cfa019230 Carpinus fangiana HOM05D003059 ORTHO05D003414 8.6e-11 69.7 49 69.4
AL8G24230 Arabidopsis lyrata HOM05D003059 ORTHO05D003414 1.1e-10 69.3 51 66.7
BcaC03g14656 Brassica carinata HOM05D003059 ORTHO05D003414 1.5e-10 68.9 53 66.0
C01p32760 Brassica napus HOM05D003059 ORTHO05D003414 1.5e-10 68.9 53 67.9
C02p20890 Brassica napus HOM05D003059 ORTHO05D003414 1.5e-10 68.9 53 66.0
BolC2t08229H Brassica oleracea HOM05D003059 ORTHO05D003414 1.5e-10 68.9 53 66.0
MELO3C002305.2 Cucumis melo HOM05D003059 ORTHO05D003414 1.5e-10 68.9 51 66.7
Duzib205G0131 Durio zibethinus HOM05D003059 ORTHO05D003414 1.5e-10 68.9 48 68.8
Oeu044590.1 Olea europaea HOM05D003059 ORTHO05D003414 1.5e-10 68.9 51 62.7
Potri.015G085100 Populus trichocarpa HOM05D003059 ORTHO05D003414 1.5e-10 68.9 49 61.2
ClCG03G003060 Citrullus lanatus HOM05D003059 ORTHO05D003414 1.9e-10 68.6 51 62.7
Cc04_g11360 Coffea canephora HOM05D003059 ORTHO05D003414 1.9e-10 68.6 52 61.5
SGA_v2.0_scaffold90G27828 Striga asiatica HOM05D003059 ORTHO05D003414 1.9e-10 68.6 46 69.6
MSTRG.4349 Avicennia marina HOM05D003059 ORTHO05D003414 2.5e-10 68.2 51 60.8
CiPaw.12G032000 Carya illinoinensis HOM05D003059 ORTHO05D003414 2.5e-10 68.2 50 68.0
Gohir.A03G074850 Gossypium hirsutum HOM05D003059 ORTHO05D003414 2.5e-10 68.2 48 66.7
CANSAT80G2485 Cannabis sativa HOM05D003059 ORTHO05D003414 3.3e-10 67.8 48 70.8
Prupe.5G164500 Prunus persica HOM05D003059 ORTHO05D003414 3.3e-10 67.8 51 68.6
Cpa.g.sc968.2 Carica papaya HOM05D003059 ORTHO05D003414 4.3e-10 67.4 53 64.2
Lsat_1_v5_gn_4_77520 Lactuca sativa HOM05D003059 ORTHO05D003414 4.3e-10 67.4 53 64.2
Lsat_1_v5_gn_4_77580 Lactuca sativa HOM05D003059 ORTHO05D003414 4.3e-10 67.4 53 64.2
AT5G50200 Arabidopsis thaliana HOM05D003059 ORTHO05D003414 5.6e-10 67.0 51 64.7
Gohir.D03G101600 Gossypium hirsutum HOM05D003059 ORTHO05D003414 5.6e-10 67.0 48 66.7
Lsat_1_v5_gn_4_77500 Lactuca sativa HOM05D003059 ORTHO05D003414 5.6e-10 67.0 53 64.2
Lsat_1_v5_gn_5_13980 Lactuca sativa HOM05D003059 ORTHO05D003414 5.6e-10 67.0 51 60.8
Potri.015G085000 Populus trichocarpa HOM05D003059 ORTHO05D003414 5.6e-10 67.0 45 66.7
CsaV3_1G008910 Cucumis sativus L. HOM05D003059 ORTHO05D003414 7.3e-10 66.6 49 65.3
Carub.0008s1021 Capsella rubella HOM05D003059 ORTHO05D003414 9.5e-10 66.2 51 66.7
DCAR_000427 Daucus carota HOM05D003059 ORTHO05D003414 9.5e-10 66.2 53 60.4
DCAR_021595 Daucus carota HOM05D003059 ORTHO05D003414 9.5e-10 66.2 53 60.4
HanXRQChr09g0272551 Helianthus annuus HOM05D003059 ORTHO05D003414 9.5e-10 66.2 48 66.7
HanXRQChr09g0272561 Helianthus annuus HOM05D003059 ORTHO05D003414 9.5e-10 66.2 48 66.7
HanXRQChr09g0272571 Helianthus annuus HOM05D003059 ORTHO05D003414 9.5e-10 66.2 48 66.7
HanXRQChr09g0272591 Helianthus annuus HOM05D003059 ORTHO05D003414 9.5e-10 66.2 48 66.7
Rhsim12G0168400 Rhododendron simsii HOM05D003059 ORTHO05D003414 9.5e-10 66.2 45 66.7
Sp6g12300 Schrenkiella parvula HOM05D003059 ORTHO05D003414 9.5e-10 66.2 53 64.2
DCAR_000428 Daucus carota HOM05D003059 ORTHO05D003414 1.2e-09 65.9 53 60.4
DCAR_021596 Daucus carota HOM05D003059 ORTHO05D003414 1.2e-09 65.9 53 60.4
Hma1.2p1_0046F.1_g027250 Hydrangea macrophylla HOM05D003059 ORTHO05D003414 1.2e-09 65.9 52 61.5
Nn4g22576 Nelumbo nucifera HOM05D003059 ORTHO05D003414 1.2e-09 65.9 48 66.7
RcHm_v2.0_Chr7g0192401 Rosa chinensis HOM05D003059 ORTHO05D003414 1.2e-09 65.9 48 66.7
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 1.6e-09 65.5 46 69.6
CARHR258420 Cardamine hirsuta HOM05D003059 ORTHO05D003414 1.6e-09 65.5 51 64.7
DCAR_016446 Daucus carota HOM05D003059 ORTHO05D003414 2.1e-09 65.1 48 64.6
DCAR_016447 Daucus carota HOM05D003059 ORTHO05D003414 2.8e-09 64.7 48 62.5
Dinv20592 Davidia involucrata HOM05D003059 ORTHO05D003414 2.8e-09 64.7 52 63.5
FvH4_5g06392 Fragaria vesca HOM05D003059 ORTHO05D003414 2.8e-09 64.7 48 64.6
Lalb_Chr07g0183011 Lupinus albus HOM05D003059 ORTHO05D003414 2.8e-09 64.7 46 69.6
Nn3g16679 Nelumbo nucifera HOM05D003059 ORTHO05D003414 2.8e-09 64.7 48 64.6
Nn3g16680 Nelumbo nucifera HOM05D003059 ORTHO05D003414 2.8e-09 64.7 48 64.6
Peaxi162Scf00801g00210 Petunia axillaris HOM05D003059 ORTHO05D003414 2.8e-09 64.7 53 62.3
Peaxi162Scf00801g00310 Petunia axillaris HOM05D003059 ORTHO05D003414 2.8e-09 64.7 53 62.3
arahy.Tifrunner.gnm1.ann1.51G7A0 Arachis hypogaea HOM05D003059 ORTHO05D003414 3.6e-09 64.3 48 64.6
arahy.Tifrunner.gnm1.ann1.UBG8L8 Arachis hypogaea HOM05D003059 ORTHO05D003414 4.7e-09 63.9 48 64.6
FAN04G0249 Fragaria x ananassa HOM05D003059 ORTHO05D003414 4.7e-09 63.9 48 60.4
Glyma.17G124900 Glycine max HOM05D003059 ORTHO05D003414 4.7e-09 63.9 51 60.8
Sabra15G0108000 Salix brachista HOM05D003059 ORTHO05D003414 4.7e-09 63.9 43 65.1
Aa31sc646G10 Aethionema arabicum HOM05D003059 ORTHO05D003414 6.2e-09 63.5 49 63.3
FAN08G0507 Fragaria x ananassa HOM05D003059 ORTHO05D003414 6.2e-09 63.5 48 62.5
FAN18G3887 Fragaria x ananassa HOM05D003059 ORTHO05D003414 6.2e-09 63.5 48 62.5
Nitab4.5_0003741g0010 Nicotiana tabacum HOM05D003059 ORTHO05D003414 6.2e-09 63.5 51 62.7
Carub.0007s1634 Capsella rubella HOM05D003059 ORTHO05D003414 8.1e-09 63.2 53 60.4
CAN.G338.50 Capsicum annuum HOM05D003059 ORTHO05D003414 8.1e-09 63.2 50 60.0
CAN.G338.53 Capsicum annuum HOM05D003059 ORTHO05D003414 8.1e-09 63.2 50 60.0
Ca_19421_v3 Cicer arietinum L. HOM05D003059 ORTHO05D003414 8.1e-09 63.2 47 63.8
GSVIVG01007624001 Vitis vinifera HOM05D003059 ORTHO05D003414 8.1e-09 63.2 49 63.3
Nitab4.5_0002522g0100 Nicotiana tabacum HOM05D003059 ORTHO05D003414 1.1e-08 62.8 52 57.7
VMungo1215G1367 Vigna mungo HOM05D003059 ORTHO05D003414 1.1e-08 62.8 49 63.3
Glyma.05G042200 Glycine max HOM05D003059 ORTHO05D003414 1.4e-08 62.4 51 58.8
FAN13G2161 Fragaria x ananassa HOM05D003059 ORTHO05D003414 1.8e-08 62.0 48 58.3
TPR.G37580 Trifolium pratense HOM05D003059 ORTHO05D003414 1.8e-08 62.0 47 68.1
Dinv14735 Davidia involucrata HOM05D003059 ORTHO05D003414 2.3e-08 61.6 41 70.7
Nitab4.5_0002522g0050 Nicotiana tabacum HOM05D003059 ORTHO05D003414 2.3e-08 61.6 53 56.6
PGR083G1476 Punica granatum HOM05D003059 ORTHO05D003414 2.3e-08 61.6 42 73.8
SEGI_35903 Sequoiadendron giganteum HOM05D003059 ORTHO05D003414 4.0e-08 60.8 47 63.8
DCAR_016448 Daucus carota HOM05D003059 ORTHO05D003414 6.8e-08 60.1 51 56.9
FvH4_5g06400 Fragaria vesca HOM05D003059 ORTHO05D003414 6.8e-08 60.1 47 59.6
FAN08G2517 Fragaria x ananassa HOM05D003059 ORTHO05D003414 6.8e-08 60.1 47 59.6
Lj3P1060T38 Lonicera japonica HOM05D003059 ORTHO05D003414 6.8e-08 60.1 43 65.1
Nitab4.5_0008037g0060 Nicotiana tabacum HOM05D003059 ORTHO05D003414 8.9e-08 59.7 52 55.8
Phvul.003G205900 Phaseolus vulgaris HOM05D003059 ORTHO05D003414 8.9e-08 59.7 51 56.9
Peaxi162Scf00089g01210 Petunia axillaris HOM05D003059 ORTHO05D003414 1.2e-07 59.3 48 56.2
Aqoxy5G03717 Aquilegia oxysepala HOM05D003059 ORTHO05D003414 1.5e-07 58.9 48 58.3
AT4G24715 Arabidopsis thaliana HOM05D003059 ORTHO05D003414 1.5e-07 58.9 53 56.6
arahy.Tifrunner.gnm1.ann1.M19IEM Arachis hypogaea HOM05D003059 ORTHO05D003414 1.5e-07 58.9 49 59.2
Sabra12G0064300 Salix brachista HOM05D003059 ORTHO05D003414 1.5e-07 58.9 49 53.1
vmacro19289 Vaccinium macrocarpon HOM05D003059 ORTHO05D003414 1.5e-07 58.9 52 55.8
Psat4g061680 Pisum sativum HOM05D003059 ORTHO05D003414 2.0e-07 58.5 47 61.7
unitig_0.g1416 Utricularia gibba HOM05D003059 ORTHO05D003414 2.0e-07 58.5 45 60.0
arahy.Tifrunner.gnm1.ann1.S8YI67 Arachis hypogaea HOM05D003059 ORTHO05D003414 2.6e-07 58.2 51 56.9
Lsat_1_v5_gn_4_3961 Lactuca sativa HOM05D003059 ORTHO05D003414 2.6e-07 58.2 47 55.3
MD14G1170300 Malus domestica HOM05D003059 ORTHO05D003414 2.6e-07 58.2 47 61.7
Potri.012G089300 Populus trichocarpa HOM05D003059 ORTHO05D003414 2.6e-07 58.2 49 49.0
FAN08G1195 Fragaria x ananassa HOM05D003059 ORTHO05D003414 3.4e-07 57.8 51 51.0
Lj4g0007813 Lotus japonicus HOM05D003059 ORTHO05D003414 3.4e-07 57.8 42 69.0
Peaxi162Scf00089g01241 Petunia axillaris HOM05D003059 ORTHO05D003414 4.4e-07 57.4 53 54.7
BcaC09g50837 Brassica carinata HOM05D003059 ORTHO05D003414 5.8e-07 57.0 51 52.9
CAN.G126.45 Capsicum annuum HOM05D003059 ORTHO05D003414 5.8e-07 57.0 47 53.2
Lalb_Chr08g0236821 Lupinus albus HOM05D003059 ORTHO05D003414 5.8e-07 57.0 45 62.2
MD06G1164900 Malus domestica HOM05D003059 ORTHO05D003414 5.8e-07 57.0 47 61.7
SEGI_10055 Sequoiadendron giganteum HOM05D003059 ORTHO05D003414 5.8e-07 57.0 47 61.7
BcaNung07360 Brassica carinata HOM05D003059 ORTHO05D003414 7.6e-07 56.6 51 54.9
C01p20040 Brassica napus HOM05D003059 ORTHO05D003414 7.6e-07 56.6 51 54.9
CANSAT01G1686 Cannabis sativa HOM05D003059 ORTHO05D003414 7.6e-07 56.6 47 57.4
Solyc03g112100.3 Solanum lycopersicum HOM05D003059 ORTHO05D003414 7.6e-07 56.6 47 59.6
Sopen03g031200 Solanum pennellii HOM05D003059 ORTHO05D003414 7.6e-07 56.6 47 59.6
BolC1t01931H Brassica oleracea HOM05D003059 ORTHO05D003414 1.3e-06 55.8 51 54.9
HanXRQChr05g0156191 Helianthus annuus HOM05D003059 ORTHO05D003414 1.7e-06 55.5 52 55.8
CDE06G1658 Ceratophyllum demersum HOM05D003059 ORTHO05D003414 2.2e-06 55.1 44 56.8
CDE09G0362 Ceratophyllum demersum HOM05D003059 ORTHO05D003414 2.2e-06 55.1 44 59.1
Thhalv10027123m.g Eutrema salsugineum HOM05D003059 ORTHO05D003414 2.2e-06 55.1 43 58.1
PSO478G1458 Papaver somniferum HOM05D003059 ORTHO05D003414 2.2e-06 55.1 48 56.2
Sp7g22700 Schrenkiella parvula HOM05D003059 ORTHO05D003414 2.2e-06 55.1 51 49.0
Oeu036016.1 Olea europaea HOM05D003059 ORTHO05D003414 2.9e-06 54.7 37 70.3
A01p16050 Brassica napus HOM05D003059 ORTHO05D003414 3.7e-06 54.3 51 52.9
Sc04g0001390 Simmondsia chinensis HOM05D003059 ORTHO05D003414 3.7e-06 54.3 51 52.9
PGSC0003DMG400018129 Solanum tuberosum HOM05D003059 ORTHO05D003414 3.7e-06 54.3 45 51.1
CDE02G0488 Ceratophyllum demersum HOM05D001387 ORTHO05D001250 4.9e-06 53.9 50 48.0
HanXRQChr17g0569521 Helianthus annuus HOM05D003059 ORTHO05D003414 4.9e-06 53.9 47 53.2
Medtr4g104700 Medicago truncatula HOM05D003059 ORTHO05D003414 6.4e-06 53.5 46 60.9
Medtr4g104730 Medicago truncatula HOM05D003059 ORTHO05D003414 6.4e-06 53.5 46 60.9
Hund18487 Selenicereus undatus HOM05D003059 ORTHO05D003414 8.4e-06 53.1 54 55.6


User provided reference genes

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