Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.3e-83 311.6 154 100.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 3.3e-46 188.7 94 98.9
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-40 170.2 112 80.4
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 8.9e-36 154.1 101 79.2
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-35 153.3 112 72.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.6e-35 152.5 108 73.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.7e-34 149.8 112 69.6
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.2e-34 149.4 113 69.0
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.4e-34 147.9 112 68.8
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 8.4e-34 147.5 111 69.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-33 147.1 112 67.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-33 147.1 112 67.9
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.1e-33 147.1 111 68.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.1e-33 147.1 108 66.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-33 147.1 111 68.5
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.9e-33 146.4 112 67.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.9e-33 146.4 111 68.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.9e-33 146.4 111 68.5
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.9e-33 146.4 111 68.5
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.4e-33 146.0 112 67.9
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.4e-33 146.0 114 66.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.1e-33 145.2 111 67.6
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 5.4e-33 144.8 112 65.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 5.4e-33 144.8 114 65.8
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.4e-33 144.8 112 66.1
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 7.1e-33 144.4 111 67.6
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 7.1e-33 144.4 112 67.9
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 9.2e-33 144.1 111 65.8
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 9.2e-33 144.1 112 64.3
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 9.2e-33 144.1 107 66.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 9.2e-33 144.1 116 62.1
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.2e-33 144.1 116 62.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.2e-33 144.1 116 62.1
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.2e-33 144.1 116 62.1
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.2e-32 143.7 116 63.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.2e-32 143.7 119 63.0
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.6e-32 143.3 108 68.5
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.6e-32 143.3 107 67.3
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.1e-32 142.9 110 66.4
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.1e-32 142.9 111 66.7
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.7e-32 142.5 111 64.0
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 3.5e-32 142.1 113 62.8
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.5e-32 142.1 113 62.8
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 3.5e-32 142.1 113 62.8
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.5e-32 142.1 106 67.9
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.5e-32 142.1 111 66.7
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 4.6e-32 141.7 111 65.8
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.6e-32 141.7 116 60.3
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 6.0e-32 141.4 111 64.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 6.0e-32 141.4 113 65.5
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.8e-32 141.0 121 60.3
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.0e-31 140.6 111 63.1
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.0e-31 140.6 112 64.3
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-31 140.2 111 64.9
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.3e-31 140.2 112 64.3
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.7e-31 139.8 112 63.4
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.7e-31 139.8 112 64.3
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.7e-31 139.8 112 65.2
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.3e-31 139.4 112 64.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 2.3e-31 139.4 111 64.9
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 3.9e-31 138.7 111 63.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.9e-31 138.7 111 64.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.9e-31 138.7 112 64.3
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.9e-31 138.7 106 67.0
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 5.1e-31 138.3 111 64.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 5.1e-31 138.3 111 64.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.1e-31 138.3 111 64.0
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 6.6e-31 137.9 112 62.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 6.6e-31 137.9 108 64.8
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.6e-31 137.9 111 63.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 6.6e-31 137.9 112 62.5
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.1e-30 137.1 112 63.4
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.5e-30 136.7 113 63.7
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-30 136.7 118 61.0
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.9e-30 136.3 107 64.5
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 2.5e-30 136.0 108 63.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.5e-30 136.0 108 64.8
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.3e-30 135.6 108 62.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 3.3e-30 135.6 112 61.6
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 4.3e-30 135.2 107 64.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.3e-30 135.2 108 63.9
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 4.3e-30 135.2 122 59.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 5.6e-30 134.8 112 58.9
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 7.3e-30 134.4 112 58.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 9.6e-30 134.0 112 60.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 9.6e-30 134.0 116 61.2
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.2e-29 133.7 111 60.4
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.2e-29 133.7 111 59.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.2e-29 133.7 112 61.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.2e-29 133.7 112 61.6
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.6e-29 133.3 112 58.0
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 2.1e-29 132.9 112 57.1
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 2.1e-29 132.9 112 57.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.1e-29 132.9 108 63.0
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.1e-29 132.9 112 61.6
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.8e-29 132.5 112 58.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.8e-29 132.5 111 58.6
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.8e-29 132.5 108 63.9
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 3.6e-29 132.1 114 57.9
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 3.6e-29 132.1 114 57.9
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.6e-29 132.1 112 58.9
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.6e-29 132.1 111 60.4
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.7e-29 131.7 108 60.2
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.7e-29 131.7 111 62.2
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 6.2e-29 131.3 112 58.0
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 8.1e-29 131.0 106 60.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.1e-28 130.6 112 57.1
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.1e-28 130.6 112 58.9
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.8e-28 129.8 112 56.2
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.1e-28 129.0 111 57.7
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 4.0e-28 128.6 114 57.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 4.0e-28 128.6 114 57.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 4.0e-28 128.6 114 57.0
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.0e-28 128.6 112 59.8
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 6.8e-28 127.9 108 61.1
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.8e-28 127.9 108 60.2
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 8.9e-28 127.5 108 62.0
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.0e-27 126.3 108 57.4
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.0e-27 126.3 112 56.2
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.0e-27 126.3 112 55.4
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.0e-27 126.3 112 58.0
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 4.4e-27 125.2 108 57.4
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.4e-27 125.2 108 59.3
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 7.6e-27 124.4 108 60.2
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.7e-26 123.2 108 57.4
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.7e-26 123.2 112 56.2
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 2.9e-26 122.5 110 56.4
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 4.9e-26 121.7 107 57.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.4e-26 121.3 89 64.0
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.4e-25 119.4 110 54.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.4e-25 118.2 106 58.5
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 7.1e-25 117.9 112 51.8
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.2e-24 117.1 112 53.6
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.6e-24 116.7 92 67.4
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 2.1e-24 116.3 112 53.6
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.1e-24 116.3 112 53.6
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.1e-24 116.3 110 53.6
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.8e-24 114.4 92 67.4
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.0e-23 112.5 112 51.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.2e-21 104.8 97 61.9
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.1e-20 102.4 110 46.4
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-18 96.7 78 65.4
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.1e-16 89.7 108 40.7
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.7e-16 89.4 54 74.1
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 3.5e-16 89.0 57 77.2
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.0e-15 85.9 108 41.7
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.6e-15 84.7 47 80.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.7e-15 84.3 46 82.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.5e-14 82.8 108 40.7
Manes.07G009937 Manihot esculenta HOM05D000009 ORTHO05D010993 2.5e-14 82.8 54 74.1
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 5.6e-14 81.6 109 36.7
Manes.07G008700 Manihot esculenta HOM05D000009 ORTHO05D000008 9.6e-14 80.9 44 88.6
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 4.8e-13 78.6 83 49.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.8e-12 76.6 56 71.4
Manes.07G043983 Manihot esculenta HOM05D000009 ORTHO05D000008 2.4e-12 76.3 50 74.0
Manes.07G009801 Manihot esculenta HOM05D000009 ORTHO05D000008 3.1e-12 75.9 41 87.8
Manes.07G009740 Manihot esculenta HOM05D000009 ORTHO05D000008 4.0e-12 75.5 43 83.7
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 4.0e-12 75.5 47 72.3
Manes.07G009201 Manihot esculenta HOM05D000009 ORTHO05D000008 6.9e-12 74.7 42 83.3
Manes.07G008900 Manihot esculenta HOM05D000009 ORTHO05D000008 9.0e-12 74.3 41 85.4
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 9.9e-11 70.9 101 35.6
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.7e-10 70.1 65 61.5
Manes.07G043891 Manihot esculenta HOM05D000009 ORTHO05D000008 1.4e-09 67.0 42 76.2
Manes.07G009020 Manihot esculenta HOM05D000009 ORTHO05D000008 1.9e-09 66.6 42 76.2
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.9e-09 66.6 47 68.1
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.4e-09 66.2 50 58.0
Manes.07G045400 Manihot esculenta HOM05D000009 ORTHO05D000008 2.4e-09 66.2 42 76.2
Manes.07G044532 Manihot esculenta HOM05D000009 ORTHO05D010993 3.2e-09 65.9 43 74.4
Manes.07G009500 Manihot esculenta HOM05D000009 ORTHO05D000008 9.3e-09 64.3 49 67.3
Manes.07G043800 Manihot esculenta HOM05D000009 ORTHO05D000008 2.1e-08 63.2 42 73.8
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 7.9e-08 61.2 40 67.5
Manes.10G112309 Manihot esculenta HOM05D000009 ORTHO05D000008 3.0e-07 59.3 71 42.3
Manes.10G137484 Manihot esculenta HOM05D000009 ORTHO05D012661 8.7e-07 57.8 71 39.4
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 8.7e-07 57.8 54 44.4
Manes.10G108901 Manihot esculenta HOM05D000009 ORTHO05D010993 1.1e-06 57.4 71 39.4
Manes.10G137900 Manihot esculenta HOM05D000009 ORTHO05D000008 1.5e-06 57.0 50 54.0


User provided reference genes

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