Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G036650 Manihot esculenta HOM05D000002 ORTHO05D000001 1.7e-51 205.7 104 100.0
Manes.09G111850 Manihot esculenta HOM05D000002 ORTHO05D000001 2.0e-23 112.5 123 53.7
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-14 83.6 93 45.2
Manes.15G176648 Manihot esculenta HOM05D000002 ORTHO05D000001 3.2e-13 78.6 92 45.7
RcHm_v2.0_Chr1g0326351 Rosa chinensis HOM05D000067 ORTHO05D000097 7.2e-13 77.4 108 39.8
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-12 76.3 106 40.6
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-12 75.9 93 40.9
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 2.7e-12 75.5 99 40.4
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.6e-12 75.1 103 38.8
Hma1.2p1_0445F.1_g154480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.4e-11 73.2 93 41.9
COL.COLO4_36674 Corchorus olitorius HOM05D042556 ORTHO05D000001 1.8e-11 72.8 102 47.1
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 1.8e-11 72.8 98 40.8
FvH4_3g17262 Fragaria vesca HOM05D000002 ORTHO05D000001 3.9e-11 71.6 82 45.1
Hma1.2p1_1458F.1_g284730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.9e-11 71.6 93 40.9
MD11G1197500 Malus domestica HOM05D000002 ORTHO05D000001 3.9e-11 71.6 93 35.5
MD00G1024600 Malus domestica HOM05D000002 ORTHO05D000001 5.1e-11 71.2 98 39.8
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 5.1e-11 71.2 88 37.5
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 5.1e-11 71.2 89 40.4
MD12G1185900 Malus domestica HOM05D000002 ORTHO05D000001 8.8e-11 70.5 101 41.6
Manes.03G070776 Manihot esculenta HOM05D000002 ORTHO05D000001 8.8e-11 70.5 72 44.4
FvH4_4g33449 Fragaria vesca HOM05D000002 ORTHO05D000001 1.1e-10 70.1 91 42.9
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-10 70.1 102 38.2
Prupe.4G199600 Prunus persica HOM05D000002 ORTHO05D000001 1.5e-10 69.7 84 41.7
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.5e-10 68.9 93 37.6
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 2.5e-10 68.9 78 42.3
RcHm_v2.0_Chr2g0117741 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-10 68.9 102 41.2
Prupe.2G201300 Prunus persica HOM05D000010 ORTHO05D000001 3.3e-10 68.6 84 41.7
Hma1.2p1_0840F.1_g226720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-10 68.2 94 40.4
Hma1.2p1_1768F.1_g301510 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-10 68.2 94 40.4
Hma1.2p1_3787F.1_g337595 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-10 68.2 94 40.4
Hma1.2p1_3787F.1_g337600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-10 68.2 94 40.4
PSO421G0367 Papaver somniferum HOM05D000002 ORTHO05D000001 4.3e-10 68.2 92 33.7
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.3e-10 68.2 95 38.9
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 5.7e-10 67.8 83 41.0
HanXRQChr07g0202651 Helianthus annuus HOM05D000002 ORTHO05D000001 5.7e-10 67.8 97 42.3
Prupe.8G185100 Prunus persica HOM05D000002 ORTHO05D000001 5.7e-10 67.8 84 39.3
Sopen07g003750 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-10 67.8 105 37.1
TAR492G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.7e-10 67.8 88 42.0
Hma1.2p1_0158F.1_g069590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.4e-10 67.4 91 38.5
Hma1.2p1_2469F.1_g322690 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.4e-10 67.4 91 38.5
MD12G1254800 Malus domestica HOM05D002861 ORTHO05D003104 7.4e-10 67.4 87 41.4
TAR696G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.4e-10 67.4 90 34.4
Hma1.2p1_1446F.1_g283970 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.7e-10 67.0 94 40.4
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 9.7e-10 67.0 86 39.5
Hma1.2p1_0134F.1_g061510 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-09 66.6 94 38.3
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-09 66.2 86 36.0
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.7e-09 66.2 95 37.9
Migut.G00019 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.2e-09 65.9 96 36.5
COL.COLO4_06456 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.8e-09 65.5 94 37.2
Sopen01g012520 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-09 65.5 84 38.1
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.7e-09 65.1 104 35.6
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 3.7e-09 65.1 79 39.2
Ciclev10013318m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.8e-09 64.7 101 42.6
Sabra11G0010600 Salix brachista HOM05D000002 ORTHO05D000001 4.8e-09 64.7 89 40.4
CSS0045870 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-09 64.3 98 35.7
MD12G1175300 Malus domestica HOM05D000002 ORTHO05D000001 6.3e-09 64.3 98 37.8
TAR720G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.3e-09 64.3 95 38.9
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 8.2e-09 63.9 90 38.9
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.2e-09 63.9 106 35.8
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 8.2e-09 63.9 90 42.2
Sabra15G0028100 Salix brachista HOM05D000002 ORTHO05D000001 8.2e-09 63.9 96 35.4
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 1.1e-08 63.5 91 36.3
Sopen01g009960 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-08 63.5 100 36.0
Migut.F01590 Erythranthe guttata HOM05D000002 ORTHO05D000001 1.4e-08 63.2 98 42.9
Migut.H01198 Erythranthe guttata HOM05D000002 ORTHO05D000001 1.4e-08 63.2 98 42.9
MD13G1142500 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-08 63.2 101 33.7
MD14G1225200 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-08 63.2 96 36.5
MD17G1248200 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-08 63.2 68 44.1
Nn7g37430 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-08 63.2 108 35.2
PSO339G3884 Papaver somniferum HOM05D000002 ORTHO05D000001 1.4e-08 63.2 93 34.4
Oeu037102.1 Olea europaea HOM05D000002 ORTHO05D000001 1.8e-08 62.8 72 43.1
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 1.8e-08 62.8 105 34.3
Atru.chr2.2995 Acer truncatum HOM05D000002 ORTHO05D000001 2.4e-08 62.4 88 37.5
CSS0034941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-08 62.4 98 34.7
Migut.O00008 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.4e-08 62.4 102 32.4
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 2.4e-08 62.4 96 36.5
Sopen10g016030 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-08 62.4 92 38.0
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 3.1e-08 62.0 98 36.7
Oeu059914.1 Olea europaea HOM05D000002 ORTHO05D000001 4.1e-08 61.6 88 37.5
MD12G1254500 Malus domestica HOM05D002861 ORTHO05D003104 5.3e-08 61.2 98 35.7
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 6.9e-08 60.8 90 35.6
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 6.9e-08 60.8 101 31.7
HanXRQChr16g0523581 Helianthus annuus HOM05D000002 ORTHO05D000001 6.9e-08 60.8 89 38.2
MD02G1303700 Malus domestica HOM05D000002 ORTHO05D000001 9.1e-08 60.5 94 33.0
Manes.10G062750 Manihot esculenta HOM05D000002 ORTHO05D000001 9.1e-08 60.5 86 48.8
Oeu057479.1 Olea europaea HOM05D000002 ORTHO05D000001 9.1e-08 60.5 72 41.7
Sopen12g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 9.1e-08 60.5 92 37.0
VMungo0251G0530 Vigna mungo HOM05D000002 ORTHO05D037837 9.1e-08 60.5 88 40.9
CANSAT54G0642 Cannabis sativa HOM05D000002 ORTHO05D000001 1.2e-07 60.1 77 37.7
HanXRQChr01g0008001 Helianthus annuus HOM05D000002 ORTHO05D000001 1.2e-07 60.1 89 40.4
HanXRQChr15g0491201 Helianthus annuus HOM05D000002 ORTHO05D000001 1.2e-07 60.1 89 37.1
Oeu018031.1 Olea europaea HOM05D000002 ORTHO05D000001 1.2e-07 60.1 88 36.4
Sp1g37055 Schrenkiella parvula HOM05D000002 ORTHO05D000001 1.2e-07 60.1 72 40.3
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.2e-07 60.1 66 40.9
TAR192G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.2e-07 60.1 95 36.8
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 1.5e-07 59.7 74 39.2
COL.COLO4_13671 Corchorus olitorius HOM05D000002 ORTHO05D000001 1.5e-07 59.7 96 32.3
Oeu058588.1 Olea europaea HOM05D000002 ORTHO05D000001 1.5e-07 59.7 72 40.3
Gorai.013G092800 Gossypium raimondii HOM05D000002 ORTHO05D000001 2.0e-07 59.3 96 36.5
Oeu019477.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-07 59.3 88 36.4
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.0e-07 59.3 96 36.5
Atru.chr2.1099 Acer truncatum HOM05D000002 ORTHO05D000001 2.6e-07 58.9 93 37.6
C09p34990 Brassica napus HOM05D000002 ORTHO05D000001 2.6e-07 58.9 93 38.7
Sed0022044 Sechium edule HOM05D007933 ORTHO05D000001 2.6e-07 58.9 76 36.8
Sopen01g029710 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-07 58.9 92 37.0
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 3.4e-07 58.5 95 34.7
HanXRQChr11g0320201 Helianthus annuus HOM05D000002 ORTHO05D000001 3.4e-07 58.5 97 37.1
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 3.4e-07 58.5 100 39.0
Atru.chr5.2499 Acer truncatum HOM05D019558 ORTHO05D000001 4.5e-07 58.2 103 36.9
Nitab4.5_0000342g0060 Nicotiana tabacum HOM05D000002 ORTHO05D000001 4.5e-07 58.2 90 37.8
Oeu012960.1 Olea europaea HOM05D000002 ORTHO05D000001 4.5e-07 58.2 88 35.2
Oeu028207.1 Olea europaea HOM05D000002 ORTHO05D000001 4.5e-07 58.2 82 34.1
PSO409G0041 Papaver somniferum HOM05D000002 ORTHO05D000001 4.5e-07 58.2 92 28.3
Cpa.g.sc3.286 Carica papaya HOM05D000002 ORTHO05D000001 5.9e-07 57.8 76 42.1
Dinv15019 Davidia involucrata HOM05D000097 ORTHO05D000041 5.9e-07 57.8 98 34.7
HanXRQChr17g0566031 Helianthus annuus HOM05D000002 ORTHO05D000001 5.9e-07 57.8 82 39.0
HanXRQChr17g0568341 Helianthus annuus HOM05D000002 ORTHO05D000001 5.9e-07 57.8 90 33.3
Lj6A388G43 Lonicera japonica HOM05D000097 ORTHO05D000041 5.9e-07 57.8 90 35.6
Oeu039050.1 Olea europaea HOM05D000002 ORTHO05D000001 5.9e-07 57.8 72 41.7
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 5.9e-07 57.8 100 39.0
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.9e-07 57.8 83 33.7
COL.COLO4_28232 Corchorus olitorius HOM05D000002 ORTHO05D000001 7.7e-07 57.4 107 33.6
Dinv40329 Davidia involucrata HOM05D000097 ORTHO05D000041 7.7e-07 57.4 107 32.7
FvH4_5g09403 Fragaria vesca HOM05D000002 ORTHO05D000001 7.7e-07 57.4 77 33.8
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.7e-07 57.4 88 36.4
Sabra02G0139200 Salix brachista HOM05D000002 ORTHO05D000001 7.7e-07 57.4 104 33.7
Dinv10726 Davidia involucrata HOM05D000097 ORTHO05D000041 1.0e-06 57.0 107 39.3
Dinv23999 Davidia involucrata HOM05D000097 ORTHO05D000041 1.0e-06 57.0 98 34.7
HanXRQChr03g0078371 Helianthus annuus HOM05D000002 ORTHO05D000001 1.0e-06 57.0 108 37.0
Lj6A386G19 Lonicera japonica HOM05D014049 ORTHO05D000001 1.0e-06 57.0 90 36.7
MD12G1254700 Malus domestica HOM05D002861 ORTHO05D003104 1.0e-06 57.0 83 38.6
RcHm_v2.0_Chr7g0190501 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-06 57.0 97 33.0
THA.LOC109115986 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.0e-06 57.0 88 36.4
ECA232G3680 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-06 56.6 92 38.0
HanXRQChr10g0315391 Helianthus annuus HOM05D000002 ORTHO05D000001 1.3e-06 56.6 97 37.1
Lj6A385G50 Lonicera japonica HOM05D000097 ORTHO05D000041 1.3e-06 56.6 87 35.6
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 1.3e-06 56.6 83 31.3
TAR084G0004 Trochodendron aralioides HOM05D001435 ORTHO05D001304 1.3e-06 56.6 102 42.2
vmacro10270 Vaccinium macrocarpon HOM05D000097 ORTHO05D013593 1.3e-06 56.6 79 35.4
Atru.chr7.1131 Acer truncatum HOM05D000002 ORTHO05D000001 1.7e-06 56.2 93 37.6
Manes.10G109626 Manihot esculenta HOM05D016702 ORTHO05D000001 1.7e-06 56.2 103 32.0
Oeu035908.1 Olea europaea HOM05D000002 ORTHO05D000001 1.7e-06 56.2 96 31.2
Hma1.2p1_0660F.1_g197730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.2e-06 55.8 106 32.1
Manes.08G105950 Manihot esculenta HOM05D000002 ORTHO05D000001 2.2e-06 55.8 90 36.7
Oeu005617.1 Olea europaea HOM05D000002 ORTHO05D000001 2.2e-06 55.8 65 40.0
Oeu040352.1 Olea europaea HOM05D001270 ORTHO05D001099 2.2e-06 55.8 106 31.1
PSO170G2197 Papaver somniferum HOM05D000002 ORTHO05D000001 2.2e-06 55.8 93 25.8
PSO384G1139 Papaver somniferum HOM05D000002 ORTHO05D000001 2.2e-06 55.8 106 34.0
RcHm_v2.0_Chr7g0182851 Rosa chinensis HOM05D000002 ORTHO05D000001 2.2e-06 55.8 94 34.0
COL.COLO4_38494 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.9e-06 55.5 81 37.0
HanXRQChr09g0251421 Helianthus annuus HOM05D000530 ORTHO05D003341 2.9e-06 55.5 92 37.0
HanXRQChr17g0541461 Helianthus annuus HOM05D000002 ORTHO05D000001 2.9e-06 55.5 97 34.0
Hma1.2p1_0110F.1_g052720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-06 55.5 94 30.9
Rhsim02G0160900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-06 55.5 106 34.9
Sopen11g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-06 55.5 92 34.8
COL.COLO4_21367 Corchorus olitorius HOM05D000002 ORTHO05D000001 3.8e-06 55.1 81 35.8
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 3.8e-06 55.1 85 31.8
Dinv40326 Davidia involucrata HOM05D000097 ORTHO05D000041 3.8e-06 55.1 93 32.3
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 3.8e-06 55.1 87 31.0
THA.LOC109116472 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.8e-06 55.1 89 33.7
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 5.0e-06 54.7 88 31.8
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 5.0e-06 54.7 82 34.1
PSO674G0121 Papaver somniferum HOM05D000002 ORTHO05D000001 5.0e-06 54.7 93 23.7
Atru.chr10.264 Acer truncatum HOM05D000002 ORTHO05D000001 6.5e-06 54.3 89 32.6
Dinv13269 Davidia involucrata HOM05D000097 ORTHO05D000041 6.5e-06 54.3 99 31.3
Peaxi162Scf01254g00010 Petunia axillaris HOM05D015337 ORTHO05D019322 6.5e-06 54.3 87 32.2
QL02p077346 Quercus lobata HOM05D000002 ORTHO05D000001 6.5e-06 54.3 96 37.5
BcaC06g34797 Brassica carinata HOM05D000002 ORTHO05D031933 8.5e-06 53.9 75 36.0
CSS0007683 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-06 53.9 78 42.3
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-06 53.9 103 35.9
Dinv23993 Davidia involucrata HOM05D000097 ORTHO05D000041 8.5e-06 53.9 97 39.2
ECA232G3484 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-06 53.9 88 35.2
ECA246G2563 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-06 53.9 88 34.1
Eucgr.H01979 Eucalyptus grandis HOM05D000002 ORTHO05D000001 8.5e-06 53.9 75 38.7
HanXRQChr07g0187191 Helianthus annuus HOM05D000002 ORTHO05D000001 8.5e-06 53.9 89 34.8
HanXRQChr17g0541481 Helianthus annuus HOM05D000002 ORTHO05D000001 8.5e-06 53.9 84 36.9
PSO104G0170 Papaver somniferum HOM05D003193 ORTHO05D000001 8.5e-06 53.9 84 31.0
Sabra14G0114400 Salix brachista HOM05D000002 ORTHO05D000001 8.5e-06 53.9 107 31.8
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 8.5e-06 53.9 97 32.0
Sopen04g009110 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-06 53.9 92 33.7
TAR607G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 8.5e-06 53.9 74 41.9


User provided reference genes

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