Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 1.2e-121 439.9 231 100.0
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 9.1e-85 317.4 231 71.4
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 2.9e-83 312.4 227 70.9
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 4.2e-82 308.5 234 69.7
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.6e-81 306.6 233 68.2
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.2e-79 300.4 233 67.4
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 4.4e-79 298.5 233 69.5
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 5.7e-79 298.1 233 68.7
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 2.8e-78 295.8 226 69.5
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 6.3e-78 294.7 233 67.0
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 1.8e-77 293.1 233 67.0
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 1.8e-77 293.1 233 67.0
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.4e-77 292.7 233 67.0
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 5.4e-77 291.6 234 67.5
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 1.6e-76 290.0 233 66.1
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 3.5e-76 288.9 234 67.5
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 4.5e-76 288.5 232 66.8
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 4.5e-76 288.5 233 66.1
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 5.9e-76 288.1 231 68.8
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.3e-75 286.2 231 65.8
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 5.0e-75 285.0 231 66.7
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 1.5e-74 283.5 233 63.9
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 4.7e-73 278.5 232 64.2
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 1.0e-72 277.3 234 65.8
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 1.4e-72 276.9 232 64.7
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 1.4e-72 276.9 233 64.8
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 2.3e-72 276.2 235 63.8
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 5.2e-72 275.0 232 62.5
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 8.9e-72 274.2 231 63.2
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 2.6e-71 272.7 233 62.7
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 3.4e-71 272.3 229 62.9
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 4.4e-71 271.9 231 67.5
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 7.5e-71 271.2 232 61.2
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 1.3e-70 270.4 231 63.2
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 2.9e-70 269.2 232 61.2
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 3.7e-70 268.9 226 63.7
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 3.7e-70 268.9 232 64.7
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 4.9e-70 268.5 231 61.5
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 1.1e-69 267.3 231 62.3
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.1e-69 267.3 226 62.4
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.9e-69 266.5 233 60.5
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 2.4e-69 266.2 236 61.4
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 4.1e-69 265.4 231 62.3
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 7.0e-69 264.6 226 65.5
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 9.2e-69 264.2 226 61.5
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.2e-69 264.2 233 64.8
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.6e-68 263.5 231 60.6
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 2.7e-68 262.7 234 60.3
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 3.5e-68 262.3 234 62.4
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 7.8e-68 261.2 231 59.3
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.0e-67 260.8 233 60.5
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 1.3e-67 260.4 232 59.1
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 1.3e-67 260.4 231 60.6
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 3.0e-67 259.2 231 58.9
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 5.0e-67 258.5 233 61.4
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 8.6e-67 257.7 231 64.1
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 3.3e-66 255.8 224 64.7
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 5.6e-66 255.0 234 59.8
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 5.6e-66 255.0 231 61.5
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 7.3e-66 254.6 231 59.7
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 7.3e-66 254.6 224 62.9
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 3.6e-65 252.3 226 61.9
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 3.6e-65 252.3 233 59.2
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 4.7e-65 251.9 225 59.6
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 3.1e-64 249.2 225 60.9
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 6.8e-64 248.1 231 59.7
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 2.0e-63 246.5 232 59.5
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.6e-63 246.1 233 60.1
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 3.4e-63 245.7 237 57.4
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 7.5e-63 244.6 231 59.7
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 4.9e-62 241.9 226 60.2
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 4.9e-62 241.9 283 53.4
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 6.4e-62 241.5 235 57.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.1e-61 240.7 231 55.8
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.4e-61 240.4 232 58.2
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 1.9e-61 240.0 232 57.8
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 2.4e-61 239.6 224 60.3
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 3.2e-61 239.2 231 58.9
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 4.1e-61 238.8 231 59.3
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.2e-60 237.3 224 58.0
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.0e-59 234.2 233 58.4
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 1.0e-59 234.2 213 59.6
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.0e-59 234.2 231 55.8
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.0e-59 234.2 218 60.1
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 3.0e-59 232.6 239 56.9
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 3.0e-59 232.6 231 55.8
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 7.3e-58 228.0 243 54.3
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 6.2e-57 224.9 231 54.1
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 8.1e-57 224.6 212 58.5
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 3.1e-56 222.6 253 52.6
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 5.2e-56 221.9 233 53.6
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 1.5e-55 220.3 237 51.1
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 4.1e-53 212.2 257 51.0
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 8.6e-51 204.5 224 51.8
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.5e-50 203.8 232 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 2.5e-50 203.0 235 50.2
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 4.3e-50 202.2 239 49.8
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 4.3e-50 202.2 233 49.8
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.2e-49 200.7 226 50.4
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.5e-47 193.7 166 65.1
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 2.0e-47 193.4 224 51.3
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.3e-46 190.7 208 55.3
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 3.8e-46 189.1 221 48.0
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.9e-45 186.8 232 51.3
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 5.4e-45 185.3 216 49.5
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 6.0e-44 181.8 231 48.1
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 3.0e-43 179.5 167 61.7
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 1.8e-40 170.2 160 56.9
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.2e-39 167.5 162 59.3
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-30 137.5 264 36.0
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 8.4e-30 134.8 110 63.6
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 4.2e-29 132.5 94 73.4
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 9.6e-26 121.3 226 36.7
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 1.6e-25 120.6 95 64.2
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 4.8e-25 119.0 147 52.4
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.4e-24 116.7 97 62.9
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.9e-24 115.2 194 42.3
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 1.2e-23 114.4 279 30.5
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 4.5e-23 112.5 197 39.1
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 3.2e-21 106.3 124 52.4
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.3e-19 100.9 74 70.3
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 3.9e-19 99.4 63 74.6
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 5.6e-18 95.5 93 54.8
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 9.6e-18 94.7 93 53.8
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 1.3e-17 94.4 93 54.8
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 2.4e-16 90.1 93 52.7
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 2.0e-15 87.0 168 38.7
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.0e-15 87.0 168 38.7
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 3.8e-14 82.8 90 60.0
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.5e-13 80.1 59 72.9
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 4.6e-12 75.9 69 58.0
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 7.9e-12 75.1 79 49.4
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 3.7e-09 66.2 56 64.3


User provided reference genes

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