Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 6.2e-208 727.2 374 100.0
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 4.5e-142 508.4 371 71.7
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 3.7e-136 488.8 369 71.3
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 7.0e-135 484.6 369 69.6
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 9.1e-135 484.2 379 65.4
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 1.6e-134 483.4 374 66.8
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 3.8e-133 478.8 372 67.7
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 6.6e-133 478.0 366 67.5
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 1.5e-132 476.9 376 66.5
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 2.1e-131 473.0 369 69.6
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 8.0e-131 471.1 359 67.1
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.9e-128 461.8 380 63.2
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 1.1e-127 460.7 375 65.6
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 5.4e-127 458.4 359 66.0
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 1.0e-125 454.1 370 63.8
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.3e-125 453.8 380 64.2
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.5e-124 450.3 370 63.2
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.5e-124 449.5 384 62.0
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.7e-123 445.3 389 61.4
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 1.4e-122 443.7 386 63.7
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 2.3e-122 443.0 362 63.8
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 6.8e-122 441.4 469 54.6
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 2.6e-121 439.5 380 63.7
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 4.1e-119 432.2 376 62.2
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 4.6e-118 428.7 361 65.1
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 1.0e-117 427.6 364 61.8
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 1.3e-117 427.2 369 62.6
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 1.7e-117 426.8 368 62.2
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 5.0e-117 425.2 365 62.5
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 8.6e-117 424.5 368 60.1
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 1.9e-116 423.3 354 62.7
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 1.9e-116 423.3 361 61.2
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 2.5e-116 422.9 366 61.7
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 2.5e-116 422.9 373 60.6
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 3.3e-116 422.5 367 62.1
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 9.5e-116 421.0 373 60.3
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 8.0e-115 417.9 362 61.9
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 1.2e-113 414.1 367 61.6
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 6.4e-112 408.3 383 58.0
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 9.2e-111 404.4 395 57.2
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 4.6e-110 402.1 412 56.3
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 6.6e-109 398.3 391 57.0
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 5.6e-108 395.2 391 55.8
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 1.2e-107 394.0 414 53.9
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 3.6e-107 392.5 364 58.2
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 4.7e-107 392.1 356 54.8
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 4.7e-107 392.1 356 54.8
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 4.7e-107 392.1 344 61.3
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 6.2e-107 391.7 360 54.7
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 1.4e-106 390.6 374 55.3
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 2.3e-106 389.8 370 56.2
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 2.3e-106 389.8 366 56.0
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 4.0e-106 389.0 331 61.3
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 1.2e-105 387.5 383 53.5
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 1.5e-105 387.1 360 55.3
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 9.9e-105 384.4 363 55.6
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 2.4e-103 379.8 399 55.1
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.1e-103 379.0 359 57.7
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 5.4e-103 378.6 399 51.1
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 1.2e-102 377.5 438 50.7
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 3.5e-102 375.9 374 53.7
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 1.9e-100 370.2 413 49.6
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 1.8e-98 363.6 383 52.2
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 2.4e-98 363.2 314 59.9
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 8.9e-98 361.3 371 51.8
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 8.9e-98 361.3 282 70.9
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 1.5e-97 360.5 370 52.7
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 7.6e-97 358.2 356 52.0
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 1.3e-96 357.5 320 60.3
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 3.8e-96 355.9 391 50.1
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 6.4e-96 355.1 354 52.3
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 1.1e-95 354.4 382 50.5
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 1.9e-95 353.6 347 56.2
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 1.2e-94 350.9 404 49.5
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 7.8e-94 348.2 384 52.3
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 1.7e-93 347.1 362 53.6
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.5e-89 334.0 284 63.0
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 7.6e-89 331.6 321 54.8
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 2.9e-88 329.7 434 44.5
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 4.9e-88 328.9 348 53.2
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 4.2e-87 325.9 452 44.7
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.2e-86 324.3 374 50.3
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 7.3e-84 315.1 371 49.3
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 6.2e-83 312.0 344 53.8
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 8.1e-83 311.6 357 49.3
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 4.0e-82 309.3 317 54.3
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.0e-81 307.0 301 56.8
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.0e-81 307.0 301 56.8
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 3.4e-73 279.6 365 46.3
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 2.1e-70 270.4 176 75.0
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 9.6e-68 261.5 366 41.3
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 2.1e-67 260.4 361 41.6
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 3.1e-66 256.5 288 51.7
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 9.3e-63 245.0 421 40.4
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 1.2e-57 228.0 178 64.0
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 1.3e-51 208.0 162 63.0
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 9.1e-50 201.8 276 48.9
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 7.7e-49 198.7 143 66.4
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 2.5e-47 193.7 364 36.5
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 2.2e-40 170.6 165 57.6
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 1.4e-39 167.9 183 54.6
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 2.7e-38 163.7 192 52.1
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 4.4e-28 129.8 91 65.9
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 4.4e-28 129.8 91 65.9
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 3.5e-25 120.2 152 50.0
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 7.7e-25 119.0 334 29.0
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 2.6e-20 104.0 150 42.7
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.7e-19 101.3 156 41.7
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 2.8e-19 100.5 108 55.6
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 1.7e-11 74.7 59 55.9
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 9.5e-07 58.9 125 41.6


User provided reference genes

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