Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.2e-89 333.2 174 100.0
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 3.5e-81 305.1 174 86.8
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.8e-80 302.8 174 87.4
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 2.3e-80 302.4 174 86.2
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.0e-80 302.0 174 86.2
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 85.6
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.1e-79 300.1 174 86.8
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.9e-79 299.3 174 85.1
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 2.8e-78 295.4 174 86.2
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 3.1e-77 292.0 174 84.5
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.3e-75 286.6 174 82.2
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 80.5
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.9
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.9
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.3
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 79.9
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 82.8
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 80.5
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 5.5e-74 281.2 174 79.9
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 5.5e-74 281.2 174 79.9
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 81.0
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 79.3
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 81.6
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 2.7e-73 278.9 174 79.3
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.7e-73 278.9 174 79.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 78.7
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 78.7
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 82.2
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 79.3
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 78.2
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 79.3
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 78.7
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 78.7
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 78.2
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 79.9
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.5e-71 273.1 174 77.0
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.9e-71 272.7 175 78.9
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 81.0
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 9.7e-71 270.4 194 72.7
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 78.2
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 76.4
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 76.4
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 77.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.8e-70 268.9 171 81.3
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 76.4
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 75.9
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 79.3
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 74.7
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.9
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 76.4
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 75.3
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.5e-68 263.1 175 74.9
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 72.4
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 75.9
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.6
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 1.3e-67 260.0 198 69.7
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 75.3
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 74.1
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 73.0
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 73.6
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 73.6
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 74.1
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.9e-66 256.1 158 81.0
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 74.1
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 71.8
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 72.4
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 73.6
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 74.1
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.6e-65 253.1 143 84.6
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 71.3
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.1e-65 252.7 173 71.1
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 73.0
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 3.6e-65 251.9 173 75.7
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.9e-65 250.8 154 79.2
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 73.6
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 3.9e-64 248.4 171 74.9
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 5.1e-64 248.1 174 71.3
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 73.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 74.1
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.9e-63 246.1 171 73.1
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 75.9
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 70.7
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 7.4e-63 244.2 166 71.7
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 75.3
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 75.3
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 71.3
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 74.7
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 2.8e-62 242.3 166 71.1
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 73.6
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 70.7
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 74.1
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 3.1e-61 238.8 174 72.4
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 73.0
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 73.0
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 2.6e-60 235.7 174 70.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 5.9e-60 234.6 151 74.2
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 70.1
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.7e-59 233.0 146 79.5
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.9e-59 232.3 174 70.7
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.9e-59 232.3 174 71.3
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 71.3
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 8.5e-59 230.7 175 66.9
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.1e-57 226.1 174 70.7
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 3.6e-57 225.3 147 77.6
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 68.4
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.1e-56 221.5 172 66.9
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 6.7e-56 221.1 172 66.9
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.3e-54 216.9 196 62.8
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 2.4e-53 212.6 122 80.3
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 6.9e-53 211.1 122 79.5
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 7.2e-50 201.1 239 51.5
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.6e-49 198.7 122 77.9
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 5.2e-48 194.9 176 58.5
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 8.2e-46 187.6 171 54.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.8e-45 186.4 175 54.9
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 3.1e-45 185.7 182 56.6
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 2.7e-41 172.6 176 52.3
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.4e-40 170.2 172 48.3
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.6e-39 166.0 173 52.6
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 3.3e-39 165.6 95 81.1
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.4e-37 160.2 94 76.6
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 4.1e-37 158.7 93 78.5
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.7e-36 156.0 173 43.4
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.0e-35 154.1 94 72.3
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 3.7e-30 135.6 97 68.0
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 9.5e-26 120.9 127 55.1
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.2e-25 120.6 96 55.2
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.8e-25 119.4 75 74.7
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 8.9e-24 114.4 67 76.1
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 3.7e-22 109.0 85 71.8
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 7.8e-20 101.3 171 35.1
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-19 100.9 53 84.9
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.0e-19 98.6 55 80.0
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 5.6e-18 95.1 146 34.9
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.3e-16 89.7 48 83.3
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.1e-13 80.9 38 92.1
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.7e-12 76.3 76 53.9
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.3e-11 73.9 169 29.0
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.3e-08 63.2 154 32.5
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.5e-07 58.2 28 89.3
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 8.3e-06 54.7 48 56.2


User provided reference genes

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