Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G029800 Manihot esculenta HOM05D007179 ORTHO05D009124 1.0e-76 290.0 149 100.0
Potri.006G175600 Populus trichocarpa HOM05D007179 ORTHO05D009124 3.7e-47 191.8 146 71.2
Sabra06G0134300 Salix brachista HOM05D007179 ORTHO05D009124 1.2e-45 186.8 146 69.2
Rhsim01G0010000 Rhododendron simsii HOM05D007179 ORTHO05D009124 1.2e-40 170.2 147 66.0
CiPaw.08G039500 Carya illinoinensis HOM05D007179 ORTHO05D009124 4.4e-40 168.3 140 67.9
Gohir.D05G007500 Gossypium hirsutum HOM05D007179 ORTHO05D009124 1.7e-39 166.4 135 68.9
Dinv41297 Davidia involucrata HOM05D007179 ORTHO05D009124 2.2e-39 166.0 145 62.1
Gorai.009G007600 Gossypium raimondii HOM05D007179 ORTHO05D009124 8.3e-39 164.1 135 68.1
Gohir.A05G006600 Gossypium hirsutum HOM05D007179 ORTHO05D009124 1.1e-38 163.7 135 68.1
TAR626G0641 Trochodendron aralioides HOM05D007179 ORTHO05D009124 1.4e-38 163.3 145 63.4
Cpa.g.c29666.1 Carica papaya HOM05D007179 ORTHO05D009124 2.4e-38 162.5 136 62.5
Medtr4g129320 Medicago truncatula HOM05D007179 ORTHO05D009124 2.4e-38 162.5 142 62.0
CANSAT11G0330 Cannabis sativa HOM05D007179 ORTHO05D009124 7.1e-38 161.0 141 61.7
Prupe.1G095600 Prunus persica HOM05D007179 ORTHO05D009124 1.2e-37 160.2 141 63.8
TWI63G0613 Tripterygium wilfordii HOM05D007179 ORTHO05D009124 1.6e-37 159.8 143 64.3
CSS0047035 Camellia sinensis var. sinensis HOM05D007179 ORTHO05D009124 2.7e-37 159.1 118 67.8
MD16G1263600 Malus domestica HOM05D007179 ORTHO05D009124 3.9e-36 155.2 142 62.0
Psat0s236g0160 Pisum sativum HOM05D007179 ORTHO05D009124 6.6e-36 154.5 141 58.2
arahy.Tifrunner.gnm1.ann1.7FN6WP Arachis hypogaea HOM05D007179 ORTHO05D009124 8.6e-36 154.1 141 61.0
CiPaw.07G187200 Carya illinoinensis HOM05D007179 ORTHO05D009124 8.6e-36 154.1 140 62.1
arahy.Tifrunner.gnm1.ann1.8TJD28 Arachis hypogaea HOM05D007179 ORTHO05D009124 1.9e-35 152.9 143 59.4
SalBow1G0390 Salvia bowleyana HOM05D007179 ORTHO05D009124 3.3e-35 152.1 137 59.9
Thecc.09G162500 Theobroma cacao HOM05D007179 ORTHO05D009124 1.2e-34 150.2 135 65.2
Oeu058831.1 Olea europaea HOM05D007179 ORTHO05D009124 2.8e-34 149.1 146 57.5
Nn1g04316 Nelumbo nucifera HOM05D007179 ORTHO05D009124 4.7e-34 148.3 126 63.5
Ciclev10009752m.g Citrus clementina HOM05D007179 ORTHO05D009124 1.8e-33 146.4 116 69.0
Lalb_Chr13g0300481 Lupinus albus HOM05D007179 ORTHO05D009124 3.1e-33 145.6 120 65.0
Sed0008122 Sechium edule HOM05D007179 ORTHO05D009124 4.0e-33 145.2 112 67.9
PGR102G1777 Punica granatum HOM05D007179 ORTHO05D009124 5.2e-33 144.8 148 60.1
Atru.chr7.533 Acer truncatum HOM05D007179 ORTHO05D009124 1.5e-32 143.3 144 58.3
Lj4g0019685 Lotus japonicus HOM05D007179 ORTHO05D009124 2.0e-32 142.9 123 61.0
GSVIVG01032307001 Vitis vinifera HOM05D007179 ORTHO05D009124 2.6e-32 142.5 146 58.9
MSTRG.26242 Avicennia marina HOM05D007179 ORTHO05D009124 3.4e-32 142.1 137 57.7
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 5.8e-32 141.4 138 62.3
RcHm_v2.0_Chr4g0404651 Rosa chinensis HOM05D007179 ORTHO05D009124 1.3e-31 140.2 142 58.5
Lsat_1_v5_gn_8_65641 Lactuca sativa HOM05D007179 ORTHO05D009124 1.7e-31 139.8 143 55.9
Sc14g0001110 Simmondsia chinensis HOM05D007179 ORTHO05D009124 2.2e-31 139.4 130 59.2
DCAR_017946 Daucus carota HOM05D007179 ORTHO05D009124 4.9e-31 138.3 112 63.4
FvH4_4g08570 Fragaria vesca HOM05D007179 ORTHO05D009124 4.1e-30 135.2 147 56.5
MELO3C004033.2 Cucumis melo HOM05D007179 ORTHO05D009124 5.4e-30 134.8 143 57.3
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 9.2e-30 134.0 97 72.2
CsaV3_2G008330 Cucumis sativus L. HOM05D007179 ORTHO05D009124 1.6e-29 133.3 141 59.6
Peaxi162Scf00457g00318 Petunia axillaris HOM05D007179 ORTHO05D009124 1.6e-29 133.3 134 56.7
Aqoxy7G03201 Aquilegia oxysepala HOM05D007179 ORTHO05D009124 2.7e-29 132.5 153 52.9
Glyma.17G067900 Glycine max HOM05D007179 ORTHO05D009124 3.5e-29 132.1 130 55.4
Eucgr.C02437 Eucalyptus grandis HOM05D007179 ORTHO05D009124 4.6e-29 131.7 147 55.1
Actinidia24032 Actinidia chinensis HOM05D007179 ORTHO05D009124 6.0e-29 131.3 130 58.5
PGSC0003DMG400027448 Solanum tuberosum HOM05D007179 ORTHO05D009124 1.3e-28 130.2 144 53.5
CAN.G584.44 Capsicum annuum HOM05D007179 ORTHO05D009124 1.7e-28 129.8 122 56.6
Solyc07g006490.3 Solanum lycopersicum HOM05D007179 ORTHO05D009124 1.7e-28 129.8 118 59.3
Migut.K00269 Erythranthe guttata HOM05D007179 ORTHO05D009124 3.0e-28 129.0 139 54.7
Nitab4.5_0011540g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 5.1e-28 128.3 102 69.6
Sopen07g002570 Solanum pennellii HOM05D007179 ORTHO05D009124 6.6e-28 127.9 118 58.5
ECA236G0374 Erigeron canadensis HOM05D007179 ORTHO05D009124 1.1e-27 127.1 121 56.2
VMungo1215G3157 Vigna mungo HOM05D007179 ORTHO05D009124 1.1e-27 127.1 133 58.6
ClCG11G012230 Citrullus lanatus HOM05D007179 ORTHO05D009124 3.3e-27 125.6 112 60.7
PSO063G6628 Papaver somniferum HOM05D007179 ORTHO05D009124 3.3e-27 125.6 152 49.3
Lj9A729T43 Lonicera japonica HOM05D007179 ORTHO05D009124 4.3e-27 125.2 136 50.7
Cc06_g13840 Coffea canephora HOM05D007179 ORTHO05D009124 9.6e-27 124.0 135 53.3
HanXRQChr05g0136491 Helianthus annuus HOM05D007179 ORTHO05D009124 1.2e-26 123.6 140 55.7
MBI15_g26085_MAGBIO Magnolia biondii HOM05D007179 ORTHO05D009124 1.2e-26 123.6 98 66.3
THA.LOC104811817 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 1.2e-26 123.6 135 54.8
THA.LOC104817810 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 1.2e-26 123.6 122 55.7
ATR0580G253 Amborella trichopoda HOM05D007179 ORTHO05D009124 2.1e-26 122.9 121 57.0
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 2.8e-26 122.5 142 53.5
AL7G24590 Arabidopsis lyrata HOM05D007179 ORTHO05D009124 1.4e-25 120.2 132 53.8
PSO782G3484 Papaver somniferum HOM05D007179 ORTHO05D009124 1.8e-25 119.8 157 49.7
Hund08993 Selenicereus undatus HOM05D007179 ORTHO05D009124 1.8e-25 119.8 108 61.1
vmacro13080 Vaccinium macrocarpon HOM05D007179 ORTHO05D009124 2.4e-25 119.4 76 80.3
Carub.0007s1277 Capsella rubella HOM05D007179 ORTHO05D009124 5.2e-25 118.2 132 53.0
Aa31LG3G160 Aethionema arabicum HOM05D007179 ORTHO05D009124 6.9e-25 117.9 108 59.3
AT4G28025 Arabidopsis thaliana HOM05D007179 ORTHO05D009124 6.9e-25 117.9 120 55.0
FAN22G0121 Fragaria x ananassa HOM05D007179 ORTHO05D009124 6.9e-25 117.9 78 76.9
C01p24450 Brassica napus HOM05D007179 ORTHO05D009124 1.2e-24 117.1 112 56.2
BolC1t02394H Brassica oleracea HOM05D007179 ORTHO05D009124 1.2e-24 117.1 112 56.2
Phvul.003G150500 Phaseolus vulgaris HOM05D007179 ORTHO05D009124 2.6e-24 115.9 153 49.7
BraA03t14832Z Brassica rapa HOM05D007179 ORTHO05D009124 3.4e-24 115.5 98 60.2
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 5.8e-24 114.8 115 53.9
C07p55870 Brassica napus HOM05D007179 ORTHO05D009124 7.6e-24 114.4 98 59.2
AUR62039974 Chenopodium quinoa HOM05D007179 ORTHO05D009124 9.9e-24 114.0 154 49.4
Sp7g25970 Schrenkiella parvula HOM05D007179 ORTHO05D009124 9.9e-24 114.0 145 45.5
A03p57660 Brassica napus HOM05D007179 ORTHO05D009124 1.3e-23 113.6 98 59.2
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 1.7e-23 113.2 119 52.1
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 2.2e-23 112.8 119 51.3
Thhalv10026434m.g Eutrema salsugineum HOM05D007179 ORTHO05D009124 2.2e-23 112.8 138 49.3
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 8.4e-23 110.9 98 58.2
BcaC06g32651 Brassica carinata HOM05D007179 ORTHO05D009124 1.4e-22 110.2 126 50.0
CARHR235720 Cardamine hirsuta HOM05D007179 ORTHO05D009124 1.4e-22 110.2 110 54.5
FAN17G2417 Fragaria x ananassa HOM05D007179 ORTHO05D009124 2.4e-22 109.4 70 81.4
Actinidia24777 Actinidia chinensis HOM05D007179 ORTHO05D009124 9.3e-22 107.5 123 54.5
Hund26395 Selenicereus undatus HOM05D007179 ORTHO05D009124 9.3e-22 107.5 106 56.6
unitig_37.g12688 Utricularia gibba HOM05D007179 ORTHO05D009124 9.3e-22 107.5 94 60.6
CDE02G2992 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 4.6e-21 105.1 108 52.8
HPP92_018535 Vanilla planifolia HOM05D007179 ORTHO05D009124 6.0e-21 104.8 72 73.6
CDE05G2983 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 7.8e-21 104.4 108 55.6
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 3.9e-20 102.1 84 65.5
EL10Ac8g18859 Beta vulgaris HOM05D007179 ORTHO05D009124 1.5e-19 100.1 83 62.7
Nitab4.5_0002004g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 1.9e-19 99.8 68 76.5
Haze_22156 Corylus avellana HOM05D007179 ORTHO05D009124 4.0e-17 92.0 97 56.7
SMO358G0032 Selaginella moellendorffii HOM05D007179 ORTHO05D009124 4.0e-17 92.0 65 64.6
Zm00001eb246810 Zea mays HOM05D007179 ORTHO05D009124 4.0e-17 92.0 81 60.5
Mapoly0124s0027 Marchantia polymorpha HOM05D007179 ORTHO05D009124 5.8e-16 88.2 73 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2423 Anthoceros agrestis HOM05D007179 ORTHO05D009124 9.9e-16 87.4 122 42.6
Medtr4g129300 Medicago truncatula HOM05D007179 ORTHO05D009124 4.9e-15 85.1 66 66.7
Pp3c12_25950 Physcomitrium patens HOM05D007179 ORTHO05D009124 4.9e-15 85.1 103 46.6
SGA_v2.0_scaffold325G48698 Striga asiatica HOM05D007179 ORTHO05D009124 1.6e-13 80.1 65 63.1
Dinv42771 Davidia involucrata HOM05D007179 ORTHO05D009124 2.7e-13 79.3 102 46.1
Haze_22155 Corylus avellana HOM05D007179 ORTHO05D009124 3.9e-12 75.5 46 80.4
BcaC09g50519 Brassica carinata HOM05D000147 ORTHO05D013131 3.3e-11 72.4 55 60.0


User provided reference genes

Program Settings