Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 8.8e-195 683.3 322 100.0
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.4e-168 596.3 322 84.5
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 5.1e-166 587.8 322 83.9
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.1e-164 582.4 321 84.1
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 8.1e-164 580.5 322 82.6
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.1e-163 580.1 322 83.2
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.0e-163 578.2 322 81.1
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 4.0e-163 578.2 316 83.5
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.4e-162 575.1 322 80.7
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 4.4e-162 574.7 321 81.0
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 7.6e-162 573.9 316 82.6
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.3e-161 573.2 314 84.4
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 8.3e-161 570.5 319 81.2
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.1e-160 570.1 323 80.5
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 1.1e-160 570.1 313 84.0
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.4e-160 569.7 319 81.2
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 1.9e-160 569.3 319 81.8
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 5.4e-160 567.8 320 80.9
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 7.1e-160 567.4 322 80.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.5e-159 565.1 313 81.5
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 4.6e-159 564.7 313 83.7
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 7.8e-159 563.9 314 81.8
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.3e-158 562.4 322 80.4
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.0e-158 562.0 314 81.5
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 1.1e-157 560.1 319 79.0
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.5e-157 559.7 320 80.0
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.5e-157 558.9 322 80.1
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.5e-157 558.9 316 80.1
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 9.6e-157 557.0 320 81.9
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 9.6e-157 557.0 320 81.9
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.1e-156 553.9 322 78.3
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.8e-155 552.7 322 78.0
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 2.4e-155 552.4 322 78.3
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.4e-155 552.4 322 78.3
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.4e-155 552.4 322 79.5
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 4.0e-155 551.6 314 80.9
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 5.2e-155 551.2 322 78.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 5.2e-155 551.2 316 77.5
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 5.2e-155 551.2 319 79.0
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 6.8e-155 550.8 321 79.1
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.0e-154 549.3 322 78.6
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.4e-154 548.1 319 77.4
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 4.4e-154 548.1 311 80.1
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 4.4e-154 548.1 314 81.5
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 5.8e-154 547.7 309 80.6
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 7.6e-154 547.4 321 76.6
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 9.9e-154 547.0 314 80.3
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 2.9e-153 545.4 314 79.6
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.4e-153 543.9 327 76.8
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.1e-152 543.5 322 75.8
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.1e-152 543.5 319 77.7
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 3.2e-152 542.0 309 81.6
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 9.3e-152 540.4 322 74.8
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.1e-151 539.3 322 75.8
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 2.7e-151 538.9 319 76.8
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 4.6e-151 538.1 309 77.3
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 4.6e-151 538.1 314 79.6
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 6.0e-151 537.7 314 79.0
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.3e-150 536.6 309 79.9
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.3e-150 536.6 307 79.8
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.3e-150 535.8 318 77.7
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 3.9e-150 535.0 310 78.1
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 3.9e-150 535.0 307 79.8
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 3.9e-150 535.0 307 80.8
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 3.9e-150 535.0 320 75.6
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 5.1e-150 534.6 307 80.1
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 6.6e-150 534.3 321 75.4
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 1.5e-149 533.1 317 76.0
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.5e-149 533.1 317 76.3
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.9e-149 532.7 313 78.6
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 2.5e-149 532.3 310 77.4
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 4.3e-149 531.6 309 78.3
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 4.3e-149 531.6 312 78.8
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 5.6e-149 531.2 310 78.1
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 9.6e-149 530.4 307 79.2
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 9.6e-149 530.4 316 76.6
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.6e-148 529.6 319 75.5
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 3.6e-148 528.5 307 79.2
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 6.2e-148 527.7 310 77.4
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.2e-148 527.7 316 75.9
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 6.2e-148 527.7 314 76.4
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 1.1e-147 526.9 307 78.8
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.8e-147 526.2 310 76.8
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.8e-147 526.2 311 76.8
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 2.4e-147 525.8 322 76.7
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 6.9e-147 524.2 308 77.3
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 2.0e-146 522.7 313 76.4
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.7e-145 519.6 314 74.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.9e-145 518.1 311 76.2
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 8.4e-145 517.3 310 74.8
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-144 515.8 310 75.5
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 9.3e-144 513.8 315 77.5
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 6.0e-143 511.1 310 75.2
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 7.9e-143 510.8 310 74.2
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.0e-142 510.4 310 76.5
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.5e-141 506.5 328 72.6
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 4.8e-140 501.5 314 75.8
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 9.0e-139 497.3 309 73.5
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.2e-136 488.4 304 73.4
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.2e-135 486.9 304 72.4
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.3e-133 478.8 313 73.2
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 7.4e-133 477.6 311 68.2
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.1e-132 474.2 313 73.2
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 3.5e-127 458.8 305 72.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 2.3e-126 456.1 305 73.1
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 5.1e-126 454.9 310 70.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.9e-125 453.0 309 69.6
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 3.3e-125 452.2 312 65.4
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 5.3e-123 444.9 306 65.0
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-121 439.9 339 64.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-121 439.9 339 64.0
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 8.4e-121 437.6 286 68.2
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 7.2e-120 434.5 273 71.8
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.1e-119 431.4 451 51.4
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 3.9e-118 428.7 241 79.7
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.5e-117 426.0 304 63.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.2e-114 417.2 309 59.5
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.5e-114 415.2 304 59.2
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.0e-106 389.8 313 57.2
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 2.2e-100 369.8 211 81.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 2.4e-99 366.3 212 81.1
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 6.5e-97 358.2 196 83.7
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.2e-95 354.0 251 67.3
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 7.5e-93 344.7 214 73.4
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 2.7e-87 326.2 175 83.4
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.2e-82 310.8 176 79.0
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.0e-82 310.1 186 75.8
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 2.0e-77 293.5 304 46.1
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.4e-75 287.3 305 52.5
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.3e-48 196.4 208 44.7
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.0e-46 189.5 107 74.8
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.6e-39 167.5 99 77.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 4.4e-37 159.5 87 81.6
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-35 154.8 96 70.8
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.2e-29 134.8 81 70.4
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.6e-29 133.7 91 67.0
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.8e-28 129.8 73 80.8
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.2e-26 124.8 79 75.9
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.0e-25 121.7 316 29.7
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 3.1e-22 110.2 320 26.9
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.8e-17 94.4 62 75.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 3.4e-13 80.1 179 30.2
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.2e-11 73.2 49 63.3
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.5e-11 72.8 49 71.4
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 7.1e-11 72.4 285 25.3
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 3.0e-09 67.0 41 68.3
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 1.4e-06 58.2 46 58.7


User provided reference genes

Program Settings