Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1626.7 816 100.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1282.3 812 77.6
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1253.8 817 75.6
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1237.2 874 71.2
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1204.1 815 72.3
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1192.6 816 71.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1183.3 816 71.0
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1179.5 821 71.0
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1177.5 822 70.8
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1176.8 815 71.2
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1171.0 819 70.6
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1165.2 816 69.5
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1164.1 814 70.3
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1162.1 819 69.2
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1161.7 819 69.2
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1160.6 817 69.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1159.1 814 71.0
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1156.0 819 68.9
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1146.7 817 69.2
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1142.5 817 69.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1137.1 819 69.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1115.1 786 70.2
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 0.0e+00 1110.5 822 67.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1103.2 818 68.1
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 0.0e+00 1102.8 816 66.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1099.3 817 67.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 0.0e+00 1097.4 816 67.6
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 0.0e+00 1095.1 820 67.2
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 0.0e+00 1094.0 816 66.7
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1082.8 817 66.2
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1080.1 817 65.4
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 0.0e+00 1076.6 853 63.4
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.5e-310 1069.3 816 65.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.6e-309 1064.7 817 65.4
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 6.1e-309 1063.9 817 65.0
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 8.0e-309 1063.5 819 64.0
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.3e-308 1062.0 817 65.7
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.4e-307 1057.7 818 65.2
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 4.4e-307 1057.7 816 63.7
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.1e-305 1051.6 821 63.2
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 7.0e-305 1050.4 812 63.4
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 2.0e-304 1048.9 816 64.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.5e-304 1047.7 844 63.5
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.5e-304 1047.7 812 63.4
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 3.8e-303 1044.6 836 64.2
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.0e-303 1044.3 821 62.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 5.0e-303 1044.3 820 62.7
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 3.2e-302 1041.6 816 62.7
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 3.2e-302 1041.6 815 64.0
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.2e-302 1041.2 822 63.0
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 3.6e-301 1038.1 814 63.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.1e-301 1037.3 820 62.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 8.0e-301 1036.9 811 63.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.2e-298 1028.9 819 62.4
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.8e-298 1028.5 819 62.4
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.8e-298 1028.5 819 62.4
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.7e-298 1028.1 880 60.2
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 8.3e-298 1026.9 819 62.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 7.0e-297 1023.8 827 61.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.6e-296 1022.7 825 61.0
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.0e-295 1020.0 816 61.6
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 2.9e-295 1018.5 820 62.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 5.0e-295 1017.7 814 62.8
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 4.2e-294 1014.6 817 63.2
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 4.2e-294 1014.6 817 63.4
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.4e-292 1009.6 815 61.5
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.4e-292 1009.6 816 62.9
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.5e-291 1006.1 815 62.1
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 3.7e-290 1001.5 826 61.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 6.3e-290 1000.7 818 62.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.8e-289 999.2 815 61.1
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.6e-288 996.1 813 61.0
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 7.7e-288 993.8 816 61.3
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 2.3e-287 992.3 816 60.5
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 7.3e-286 987.3 824 61.5
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 3.0e-284 981.9 813 61.5
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 6.8e-284 980.7 816 60.8
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 8.9e-284 980.3 828 60.0
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.4e-283 978.4 819 62.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 5.7e-283 977.6 831 61.0
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.3e-282 976.5 816 61.2
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 3.2e-281 971.8 815 60.4
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.2e-280 969.9 816 60.7
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 3.5e-280 968.4 820 61.0
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 3.3e-270 935.3 818 57.9
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.7e-263 912.9 812 57.0
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.1e-257 893.6 811 55.5
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 2.7e-256 889.0 583 74.6
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 5.1e-255 884.8 813 55.5
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.3e-254 881.7 829 56.0
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.5e-251 873.2 819 56.3
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 7.6e-251 870.9 626 67.1
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.9e-250 869.0 819 56.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-243 846.7 811 53.4
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 5.6e-238 828.2 747 58.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 4.0e-236 822.0 821 51.8
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.5e-235 818.5 824 51.7
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.8e-231 806.6 889 50.6
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.2e-227 793.9 537 71.5
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.1e-208 729.9 818 47.9
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.2e-200 704.1 823 47.9
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.9e-199 699.1 821 47.5
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 8.5e-194 681.4 851 45.6
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 9.1e-188 661.4 460 70.2
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 4.5e-187 659.1 825 44.4
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.3e-183 646.7 824 45.8
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 4.6e-163 579.3 820 42.9
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 4.3e-161 572.8 817 44.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 5.6e-161 572.4 679 46.4
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.1e-160 570.5 846 38.9
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.0e-156 555.4 480 60.4
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.7e-154 550.8 593 52.4
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.3e-146 524.6 824 41.0
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.7e-139 500.4 853 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 6.0e-139 499.2 837 37.3
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 4.4e-134 483.0 338 69.5
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 5.8e-126 456.1 836 35.3
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 4.2e-108 396.7 407 53.3
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.1e-95 355.5 768 31.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 7.4e-89 332.8 405 48.1
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.7e-69 268.5 156 81.4
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 9.4e-68 262.7 299 48.5
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 5.2e-66 256.9 279 49.5
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 5.7e-65 253.4 279 49.5
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 8.3e-64 249.6 743 28.9
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 5.0e-61 240.4 203 59.6
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.0e-50 204.1 187 57.8
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 8.9e-50 203.0 847 24.3
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 7.5e-49 199.9 207 50.7
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.6e-38 165.6 133 59.4
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 7.3e-36 156.8 460 28.0
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 9.5e-36 156.4 107 72.0
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 1.8e-34 152.1 137 54.7
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 7.8e-22 110.2 97 60.8
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.4e-18 99.4 113 44.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.5e-17 95.9 113 43.4
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.6e-17 93.6 63 71.4
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 2.9e-16 91.7 62 67.7
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.9e-13 81.3 71 57.7
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.1e-13 80.9 79 49.4
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 3.1e-10 71.6 97 44.3
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.0e-09 68.9 49 65.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.4e-09 68.2 49 63.3
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.8e-09 67.4 87 37.9
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.3e-08 66.2 55 60.0
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 6.4e-08 63.9 40 75.0
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 8.4e-08 63.5 108 38.0
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 9.3e-07 60.1 37 81.1
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 9.3e-07 60.1 37 81.1
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 9.3e-07 60.1 37 81.1
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 3.5e-06 58.2 83 44.6


User provided reference genes

Program Settings