Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 1.6e-64 249.2 120 100.0
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 84.2
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 84.2
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 85.8
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 84.2
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 84.2
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 84.2
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 4.3e-54 214.5 119 82.4
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 83.3
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 79.2
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 81.7
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 82.5
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 80.8
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 2.8e-53 211.8 119 83.2
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 82.5
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 2.8e-53 211.8 119 83.2
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 82.5
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 80.0
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 4.8e-53 211.1 119 80.7
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 4.8e-53 211.1 119 80.7
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 80.8
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 80.0
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 78.3
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 83.3
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 80.8
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 79.2
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 79.2
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.0
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 79.2
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.8e-52 209.1 119 80.7
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 79.2
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 80.0
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 79.2
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 79.2
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 80.0
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 80.0
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.8
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.8
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.8
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 4.1e-52 208.0 119 80.7
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.0
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.0
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.0
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.0
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.0
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 78.3
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.0
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 79.2
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 81.7
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 6.9e-52 207.2 119 81.5
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 79.2
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 78.3
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 77.5
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 77.5
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 81.7
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 76.7
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 76.7
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 76.7
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 3.4e-51 204.9 120 79.2
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 3.4e-51 204.9 120 79.2
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 80.0
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 78.3
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 77.5
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 5.9e-51 204.1 119 78.2
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 76.7
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 79.2
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 7.7e-51 203.8 144 70.8
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 76.7
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 78.3
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 76.7
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 76.7
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.7e-50 202.6 119 76.5
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 77.5
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 78.3
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 79.2
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 77.5
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 76.7
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 77.5
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 79.2
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 78.3
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 78.3
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 78.3
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.1e-49 199.9 118 77.1
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.1e-49 199.9 120 76.7
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.4e-49 199.5 120 78.3
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.9e-49 199.1 115 80.9
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 1.9e-49 199.1 120 73.3
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.9e-49 199.1 120 75.8
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 76.7
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 3.2e-49 198.4 111 82.9
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 7.2e-49 197.2 120 76.7
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.1e-48 195.7 120 75.8
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.1e-48 195.7 120 75.8
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 2.7e-48 195.3 120 75.0
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 3.6e-48 194.9 120 75.8
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 3.6e-48 194.9 120 76.7
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.6e-48 194.5 120 75.0
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.0e-47 193.4 110 82.7
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.3e-47 192.2 110 80.9
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 2.3e-47 192.2 111 79.3
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 3.9e-47 191.4 110 80.0
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 5.1e-47 191.0 119 73.9
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 6.7e-47 190.7 120 73.3
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 3.3e-46 188.3 117 75.2
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 9.1e-44 180.3 110 76.4
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 8.5e-42 173.7 111 72.1
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.9e-41 172.6 110 73.6
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.9e-41 172.6 107 78.5
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 3.2e-41 171.8 112 73.2
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 6.1e-40 167.5 131 62.6
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 1.4e-39 166.4 120 67.5
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 8.8e-39 163.7 95 78.9
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.1e-38 163.3 213 43.2
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 2.0e-38 162.5 133 58.6
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 2.6e-38 162.2 124 65.3
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 4.4e-38 161.4 120 60.0
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 7.4e-38 160.6 110 70.9
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 7.4e-38 160.6 110 70.9
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 7.4e-38 160.6 95 78.9
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 6.3e-37 157.5 110 70.0
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 1.1e-36 156.8 169 52.7
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.0e-36 154.1 91 79.1
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 9.1e-36 153.7 91 74.7
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.2e-35 153.3 93 77.4
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 2.0e-35 152.5 94 76.6
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 2.6e-35 152.1 93 73.1
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.5e-35 151.4 91 78.0
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 4.5e-35 151.4 120 60.0
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.2e-34 149.1 91 78.0
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.0e-34 147.9 91 75.8
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 6.5e-34 147.5 120 62.5
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 1.1e-33 146.7 136 60.3
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.9e-33 146.0 86 77.9
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 9.4e-33 143.7 91 73.6
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.2e-32 143.3 89 75.3
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 6.7e-31 137.5 86 70.9
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 4.4e-30 134.8 91 70.3
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 9.7e-30 133.7 83 72.3
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 9.7e-30 133.7 94 66.0
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 2.2e-29 132.5 91 69.2
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.3e-29 131.0 77 79.2
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 5.9e-27 124.4 95 65.3
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 3.8e-26 121.7 114 48.2
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.2e-25 117.5 62 85.5
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 6.1e-24 114.4 62 83.9
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 6.1e-24 114.4 62 82.3
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 1.0e-23 113.6 62 82.3
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.0e-23 112.1 120 50.8
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 1.3e-21 106.7 91 60.4
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 4.1e-20 101.7 108 44.4
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 3.8e-18 95.1 82 61.0
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.5e-17 93.2 61 70.5
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 3.2e-17 92.0 56 75.0
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 7.2e-17 90.9 61 68.9
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 8.0e-16 87.4 115 37.4
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.0e-15 85.5 57 70.2
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 5.4e-12 74.7 44 77.3


User provided reference genes

Program Settings