Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 4.5e-153 544.7 296 100.0
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.5e-103 380.2 304 70.7
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 4.7e-102 375.2 270 72.2
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 4.0e-101 372.1 273 73.3
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.4e-100 369.0 270 73.7
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 9.9e-100 367.5 307 68.1
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-99 367.1 303 68.6
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.3e-99 367.1 303 68.6
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.9e-99 365.9 299 72.2
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.4e-99 364.8 302 67.9
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 2.1e-97 359.8 304 70.4
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 4.6e-97 358.6 322 65.5
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.3e-96 357.1 300 68.3
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.3e-96 356.3 300 68.3
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 3.9e-96 355.5 302 66.2
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.4e-93 347.1 280 68.6
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.6e-92 342.8 301 69.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 3.8e-91 339.0 306 64.1
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 3.8e-91 339.0 308 65.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.4e-90 337.0 280 70.7
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 7.1e-90 334.7 303 66.7
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 3.0e-88 329.3 275 64.7
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 7.3e-87 324.7 275 64.4
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.1e-86 323.2 292 62.3
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 4.8e-86 322.0 305 63.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.5e-84 317.0 295 60.3
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.7e-83 313.5 298 60.7
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 4.9e-83 312.0 299 64.9
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 5.4e-82 308.5 308 61.0
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 7.1e-82 308.1 299 60.5
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.3e-80 303.9 296 57.4
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.3e-80 303.1 302 58.6
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 3.0e-80 302.8 282 66.0
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 3.0e-80 302.8 291 58.1
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 6.7e-80 301.6 281 64.1
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 8.7e-80 301.2 265 62.6
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 8.7e-80 301.2 406 48.8
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.1e-79 300.8 302 57.9
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.5e-79 300.4 287 59.6
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 5.6e-79 298.5 302 57.0
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 9.6e-79 297.7 302 59.6
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.3e-78 297.4 300 58.3
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.3e-78 297.4 264 61.0
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.8e-78 296.2 285 59.3
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.6e-78 295.8 299 57.5
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 4.8e-78 295.4 302 57.3
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 8.1e-78 294.7 302 55.6
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 8.1e-78 294.7 256 62.9
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 6.9e-77 291.6 282 60.6
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.2e-76 290.8 267 63.3
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.5e-76 290.4 302 55.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 2.6e-76 289.7 293 59.4
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 3.4e-76 289.3 296 57.4
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 7.6e-76 288.1 300 60.0
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.3e-75 287.3 300 56.7
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.7e-75 287.0 307 56.0
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.7e-75 287.0 307 56.0
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.9e-75 286.2 282 62.1
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.8e-75 285.8 273 63.0
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.8e-75 285.8 304 55.6
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.1e-74 284.3 277 60.6
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.4e-74 283.9 267 60.3
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.9e-74 283.5 305 57.4
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 5.5e-74 282.0 276 60.5
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 9.3e-74 281.2 275 60.0
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-73 280.8 285 56.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.2e-73 280.8 268 63.1
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 2.7e-73 279.6 304 59.5
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 2.7e-73 279.6 304 59.5
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 4.6e-73 278.9 304 58.2
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 7.9e-73 278.1 296 56.8
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.8e-72 276.9 314 53.2
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 6.7e-72 275.0 277 63.9
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.5e-71 273.9 266 59.4
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.5e-71 273.1 302 57.6
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 5.6e-71 271.9 260 60.8
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 7.4e-71 271.6 307 57.0
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.3e-70 270.8 271 59.0
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.1e-70 270.0 302 57.3
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.1e-70 270.0 300 57.0
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.4e-69 267.3 310 55.8
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.8e-69 266.9 276 56.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 3.1e-69 266.2 286 56.3
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 9.0e-69 264.6 309 55.3
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.2e-68 264.2 280 55.4
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.0e-68 263.5 306 52.9
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.6e-68 263.1 304 56.2
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 3.4e-68 262.7 269 57.6
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.0e-67 261.2 307 55.0
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 8.4e-67 258.1 257 58.4
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.6e-65 253.8 250 60.0
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 3.5e-65 252.7 311 52.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-64 251.1 260 57.3
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 3.3e-63 246.1 297 51.5
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 6.3e-62 241.9 274 57.3
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 2.4e-61 240.0 268 56.7
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.4e-61 240.0 260 61.5
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 9.0e-61 238.0 285 55.1
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 8.5e-59 231.5 298 51.0
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.6e-57 227.3 248 59.7
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.7e-57 226.5 231 58.0
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 7.9e-57 224.9 256 54.3
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.0e-56 224.6 263 57.8
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 3.9e-56 222.6 259 55.6
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.7e-56 221.9 287 47.4
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.5e-55 220.7 294 46.6
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 5.7e-55 218.8 299 47.8
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.3e-54 217.6 260 53.1
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 3.7e-54 216.1 195 63.1
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.7e-54 216.1 257 50.2
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 3.4e-52 209.5 255 58.4
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-51 208.0 258 54.3
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.3e-51 207.6 257 50.6
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 6.1e-49 198.7 256 52.7
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 6.1e-49 198.7 256 52.7
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.8e-48 197.2 307 48.9
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 6.7e-48 195.3 258 51.6
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 5.5e-42 175.6 154 68.2
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 8.8e-40 168.3 166 62.7
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 8.8e-40 168.3 234 47.0
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.3e-39 166.4 253 45.1
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 4.4e-39 166.0 244 46.3
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 5.7e-39 165.6 179 59.2
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.3e-38 164.5 284 40.8
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 4.8e-38 162.5 301 39.9
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 3.1e-37 159.8 301 37.9
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 4.1e-37 159.5 227 43.6
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 2.6e-36 156.8 253 43.9
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.3e-35 154.5 280 37.1
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.7e-30 137.5 267 41.2
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.0e-27 128.3 279 34.8
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.5e-26 123.6 182 47.8
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.6e-25 120.9 102 66.7
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 6.8e-24 115.5 260 37.7
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-19 101.3 169 42.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 8.6e-19 98.6 87 60.9
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 8.3e-14 82.0 72 59.7
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 4.1e-13 79.7 72 70.8
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 5.4e-13 79.3 64 67.2
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.9e-11 73.6 76 55.3
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 5.0e-11 72.8 183 35.0
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 7.3e-10 68.9 62 56.5
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.6e-09 67.8 85 50.6
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.8e-09 67.0 74 50.0
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 8.9e-08 62.0 118 33.1


User provided reference genes

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