Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 8.1e-77 290.4 156 100.0
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 8.7e-71 270.4 154 92.9
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 2.2e-66 255.8 150 86.7
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 2.7e-64 248.8 154 83.1
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 4.6e-64 248.1 142 89.4
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 1.0e-63 246.9 142 88.7
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 3.0e-63 245.4 154 81.2
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 5.1e-63 244.6 153 82.4
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 5.1e-63 244.6 153 83.7
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 6.6e-63 244.2 142 87.3
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 6.6e-63 244.2 148 84.5
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 6.6e-63 244.2 148 84.5
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 6.6e-63 244.2 148 84.5
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 6.6e-63 244.2 153 79.7
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.1e-62 243.4 148 84.5
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.5e-62 243.0 145 84.1
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 1.9e-62 242.7 144 86.1
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 4.3e-62 241.5 145 83.4
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 4.3e-62 241.5 145 83.4
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 5.6e-62 241.1 147 83.0
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 5.6e-62 241.1 150 82.7
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 7.3e-62 240.7 153 77.1
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 9.6e-62 240.4 150 82.7
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.3e-61 240.0 145 82.8
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.3e-61 240.0 145 82.8
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 1.6e-61 239.6 142 85.2
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.6e-61 239.6 145 82.8
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 2.1e-61 239.2 142 83.8
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 2.1e-61 239.2 153 79.1
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 2.8e-61 238.8 150 80.0
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 2.8e-61 238.8 150 82.0
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 3.6e-61 238.4 142 83.8
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 4.8e-61 238.0 142 83.8
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 4.8e-61 238.0 145 82.8
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 8.1e-61 237.3 155 79.4
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 1.1e-60 236.9 155 78.7
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 1.1e-60 236.9 142 82.4
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.8e-60 236.1 145 82.1
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 1.8e-60 236.1 142 82.4
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 2.4e-60 235.7 142 81.7
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 2.4e-60 235.7 153 78.4
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 2.4e-60 235.7 142 83.1
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 2.4e-60 235.7 141 83.0
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 2.4e-60 235.7 141 83.0
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 2.4e-60 235.7 141 83.0
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 2.4e-60 235.7 153 77.1
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 3.1e-60 235.3 142 85.9
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 5.3e-60 234.6 140 82.9
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 5.3e-60 234.6 142 83.1
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 6.9e-60 234.2 142 81.0
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 9.0e-60 233.8 146 78.8
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 1.2e-59 233.4 142 79.6
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 1.2e-59 233.4 142 79.6
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 1.2e-59 233.4 142 83.1
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 1.5e-59 233.0 142 80.3
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 1.5e-59 233.0 142 80.3
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 1.5e-59 233.0 142 83.1
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 2.0e-59 232.6 155 79.4
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 2.6e-59 232.3 142 78.9
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 2.6e-59 232.3 142 78.9
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 2.6e-59 232.3 152 76.3
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 2.6e-59 232.3 151 78.1
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 3.4e-59 231.9 137 86.1
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 4.5e-59 231.5 142 80.3
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 4.5e-59 231.5 142 80.3
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 5.8e-59 231.1 142 79.6
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 7.6e-59 230.7 142 79.6
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 7.6e-59 230.7 154 76.6
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 9.9e-59 230.3 150 78.0
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 1.3e-58 229.9 145 76.6
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 1.3e-58 229.9 153 75.8
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.3e-58 229.9 153 76.5
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 1.7e-58 229.6 153 72.5
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 2.2e-58 229.2 142 77.5
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 4.9e-58 228.0 141 79.4
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 4.9e-58 228.0 147 78.9
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 4.9e-58 228.0 143 79.0
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 4.9e-58 228.0 145 79.3
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 8.4e-58 227.3 142 78.2
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.1e-57 226.9 155 76.8
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 2.4e-57 225.7 141 79.4
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 4.2e-57 224.9 152 74.3
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 4.2e-57 224.9 142 79.6
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 5.4e-57 224.6 142 78.9
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 7.1e-57 224.2 141 78.7
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 9.3e-57 223.8 142 79.6
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 9.3e-57 223.8 142 79.6
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 1.2e-56 223.4 151 75.5
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 1.6e-56 223.0 154 73.4
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 2.1e-56 222.6 142 77.5
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.7e-56 222.2 142 76.1
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 2.7e-56 222.2 142 78.2
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 3.5e-56 221.9 145 76.6
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 6.0e-56 221.1 141 80.9
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 7.9e-56 220.7 151 75.5
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.3e-55 219.9 142 76.8
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 1.3e-55 219.9 142 76.1
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 1.8e-55 219.5 141 78.0
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 3.0e-55 218.8 137 78.8
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 3.9e-55 218.4 152 72.4
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 3.9e-55 218.4 139 77.7
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 5.6e-54 214.5 136 79.4
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 5.6e-54 214.5 142 73.2
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 1.8e-52 209.5 155 71.0
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 4.0e-52 208.4 143 70.6
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 2.0e-51 206.1 153 67.3
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 3.4e-51 205.3 122 84.4
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 3.4e-51 205.3 143 69.9
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 2.7e-48 195.7 120 84.2
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 6.7e-47 191.0 140 70.0
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 1.1e-46 190.3 106 91.5
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 9.6e-46 187.2 108 88.0
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 1.8e-44 183.0 108 84.3
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 3.1e-44 182.2 142 65.5
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 5.3e-44 181.4 119 73.9
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 3.4e-43 178.7 141 59.6
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 1.1e-41 173.7 153 59.5
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 2.5e-38 162.5 96 82.3
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 3.3e-38 162.2 109 72.5
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 5.7e-38 161.4 140 56.4
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 1.3e-37 160.2 119 63.9
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 3.1e-36 155.6 96 79.2
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 1.2e-35 153.7 117 68.4
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 2.0e-27 126.3 79 75.9
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 4.7e-24 115.2 87 55.2
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 9.4e-17 90.9 106 53.8
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 2.0e-06 56.6 109 40.4


User provided reference genes

Program Settings