Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 3.1e-44 181.4 92 100.0
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 3.1e-44 181.4 92 100.0
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 6.3e-37 157.1 90 87.8
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 2.4e-36 155.2 90 84.4
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 5.3e-36 154.1 89 85.4
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 5.3e-36 154.1 87 89.7
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 9.1e-36 153.3 89 85.4
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 9.1e-36 153.3 90 84.4
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.2e-35 152.9 90 83.3
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 1.2e-35 152.9 88 85.2
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.6e-35 152.5 90 83.3
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.0e-35 152.1 86 86.0
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.0e-35 152.1 88 85.2
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 2.0e-35 152.1 90 84.4
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 2.0e-35 152.1 90 84.4
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.0e-35 152.1 90 83.3
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 2.6e-35 151.8 90 82.2
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 2.6e-35 151.8 90 82.2
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 3.5e-35 151.4 86 84.9
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.5e-35 151.4 90 82.2
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 5.9e-35 150.6 90 84.4
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 5.9e-35 150.6 90 81.1
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 5.9e-35 150.6 86 84.9
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.0e-34 149.8 90 82.2
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 1.0e-34 149.8 90 84.4
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 1.0e-34 149.8 90 82.2
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 1.3e-34 149.4 90 83.3
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 1.3e-34 149.4 90 83.3
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.7e-34 149.1 90 81.1
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 2.9e-34 148.3 86 84.9
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 3.8e-34 147.9 90 81.1
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 3.8e-34 147.9 89 80.9
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 5.0e-34 147.5 90 78.9
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 5.0e-34 147.5 90 78.9
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 1.1e-33 146.4 90 80.0
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.1e-33 146.4 90 80.0
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 1.1e-33 146.4 90 80.0
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 1.5e-33 146.0 90 78.9
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 1.9e-33 145.6 90 80.0
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.9e-33 145.6 90 80.0
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.9e-33 145.6 90 80.0
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 1.9e-33 145.6 90 80.0
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 2.5e-33 145.2 90 81.1
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 2.5e-33 145.2 90 80.0
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 5.5e-33 144.1 90 80.0
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 7.2e-33 143.7 90 76.7
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 9.4e-33 143.3 90 77.8
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 9.4e-33 143.3 86 80.2
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.2e-32 142.9 89 80.9
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 1.2e-32 142.9 90 76.7
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 3.6e-32 141.4 86 77.9
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 3.6e-32 141.4 90 78.9
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 4.7e-32 141.0 90 74.4
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 8.0e-32 140.2 90 77.8
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 8.0e-32 140.2 82 85.4
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 2.3e-31 138.7 90 76.7
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 2.3e-31 138.7 91 75.8
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 2.3e-31 138.7 86 79.1
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.0e-31 138.3 89 75.3
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 3.0e-31 138.3 82 85.4
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 4.0e-31 137.9 90 73.3
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 4.0e-31 137.9 86 77.9
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 4.0e-31 137.9 86 77.9
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 1.2e-30 136.3 86 79.1
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 2.0e-30 135.6 86 76.7
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 2.0e-30 135.6 86 76.7
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.6e-30 135.2 89 75.3
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 2.6e-30 135.2 86 75.6
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.4e-30 134.4 83 81.9
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 4.4e-30 134.4 86 75.6
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 5.7e-30 134.0 86 76.7
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 1.3e-29 132.9 79 82.3
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 2.2e-29 132.1 74 90.5
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 73.3
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 74.4
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.8e-29 131.0 83 80.7
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 6.3e-29 130.6 83 75.9
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 1.1e-28 129.8 86 72.1
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.1e-28 129.8 81 75.3
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 1.4e-28 129.4 82 79.3
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 3.1e-28 128.3 88 73.9
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 7.0e-28 127.1 83 75.9
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 9.1e-28 126.7 84 71.4
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 1.2e-27 126.3 83 74.7
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 2.7e-27 125.2 83 73.5
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 1.0e-26 123.2 73 82.2
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 3.8e-26 121.3 86 68.6
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 6.5e-26 120.6 86 67.4
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.5e-25 119.4 86 68.6
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 2.5e-25 118.6 86 66.3
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 3.2e-25 118.2 86 66.3
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 5.5e-25 117.5 84 66.7
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 7.2e-25 117.1 84 66.7
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 9.4e-25 116.7 84 65.5
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 9.4e-25 116.7 88 67.0
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.2e-24 116.3 83 66.3
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 1.6e-24 115.9 84 64.3
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 1.6e-24 115.9 84 64.3
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 1.6e-24 115.9 84 64.3
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 1.6e-24 115.9 84 64.3
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 6.1e-24 114.0 84 63.1
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 1.0e-23 113.2 84 63.1
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 1.0e-23 113.2 84 63.1
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 1.0e-23 113.2 83 63.9
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 1.8e-23 112.5 88 65.9
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.7e-21 105.9 90 62.2
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 2.2e-21 105.5 65 80.0
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 8.3e-21 103.6 60 85.0
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 4.1e-20 101.3 86 57.0
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 5.4e-20 100.9 79 62.0
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 1.2e-19 99.8 86 57.0
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.7e-18 95.9 70 67.1
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 6.5e-18 94.0 84 56.0
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 5.5e-17 90.9 51 88.2
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 5.2e-15 84.3 60 71.7
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 6.8e-15 84.0 60 68.3
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 2.0e-14 82.4 60 66.7
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 2.6e-14 82.0 84 51.2
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 3.4e-14 81.6 60 71.7
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 3.7e-13 78.2 70 62.9
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 1.1e-12 76.6 48 72.9
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.4e-12 75.5 49 75.5
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 8.6e-10 67.0 48 66.7
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 8.6e-10 67.0 48 66.7


User provided reference genes

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